Hb_000789_310

Information

Type -
Description -
Location Contig789: 240842-244935
Sequence    

Annotation

kegg
ID rcu:RCOM_1720820
description hypothetical protein
nr
ID XP_012085120.1
description PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
swissprot
ID Q8LBL5
description E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana GN=PRT1 PE=2 SV=2
trembl
ID A0A067K3L0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17552 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase prt1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58235: 240586-244892 , PASA_asmbl_58236: 241646-241796
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_310 0.0 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
2 Hb_007576_110 0.0404213307 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
3 Hb_000030_190 0.0518338756 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
4 Hb_033642_030 0.0549721132 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
5 Hb_000462_060 0.0565130537 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
6 Hb_000345_380 0.0581543076 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
7 Hb_001409_020 0.0597033187 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
8 Hb_002213_070 0.062572695 - - epsilon-adaptin family protein [Populus trichocarpa]
9 Hb_000366_120 0.0652610761 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
10 Hb_000060_090 0.0656677279 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
11 Hb_000029_300 0.0681173147 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
12 Hb_011037_030 0.068706045 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
13 Hb_000617_100 0.0687104103 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
14 Hb_011930_160 0.0689156465 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
15 Hb_003025_110 0.0689251758 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
16 Hb_014361_070 0.0698631509 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
17 Hb_002272_130 0.0702005618 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
18 Hb_000200_380 0.0705388389 - - PREDICTED: uncharacterized protein LOC105636933 isoform X2 [Jatropha curcas]
19 Hb_000127_040 0.0719131246 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
20 Hb_004935_030 0.0724620211 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]

Gene co-expression network

sample Hb_000789_310 Hb_000789_310 Hb_007576_110 Hb_007576_110 Hb_000789_310--Hb_007576_110 Hb_000030_190 Hb_000030_190 Hb_000789_310--Hb_000030_190 Hb_033642_030 Hb_033642_030 Hb_000789_310--Hb_033642_030 Hb_000462_060 Hb_000462_060 Hb_000789_310--Hb_000462_060 Hb_000345_380 Hb_000345_380 Hb_000789_310--Hb_000345_380 Hb_001409_020 Hb_001409_020 Hb_000789_310--Hb_001409_020 Hb_000366_120 Hb_000366_120 Hb_007576_110--Hb_000366_120 Hb_014361_070 Hb_014361_070 Hb_007576_110--Hb_014361_070 Hb_000190_120 Hb_000190_120 Hb_007576_110--Hb_000190_120 Hb_007576_110--Hb_001409_020 Hb_002375_010 Hb_002375_010 Hb_007576_110--Hb_002375_010 Hb_005291_030 Hb_005291_030 Hb_000030_190--Hb_005291_030 Hb_000030_190--Hb_000345_380 Hb_000030_190--Hb_001409_020 Hb_000030_190--Hb_007576_110 Hb_000173_490 Hb_000173_490 Hb_000030_190--Hb_000173_490 Hb_002272_130 Hb_002272_130 Hb_033642_030--Hb_002272_130 Hb_007416_300 Hb_007416_300 Hb_033642_030--Hb_007416_300 Hb_002947_030 Hb_002947_030 Hb_033642_030--Hb_002947_030 Hb_000200_380 Hb_000200_380 Hb_033642_030--Hb_000200_380 Hb_000060_090 Hb_000060_090 Hb_033642_030--Hb_000060_090 Hb_002732_040 Hb_002732_040 Hb_000462_060--Hb_002732_040 Hb_000343_250 Hb_000343_250 Hb_000462_060--Hb_000343_250 Hb_000462_060--Hb_002272_130 Hb_000617_180 Hb_000617_180 Hb_000462_060--Hb_000617_180 Hb_001047_220 Hb_001047_220 Hb_000462_060--Hb_001047_220 Hb_105328_020 Hb_105328_020 Hb_000345_380--Hb_105328_020 Hb_011037_030 Hb_011037_030 Hb_000345_380--Hb_011037_030 Hb_008406_200 Hb_008406_200 Hb_000345_380--Hb_008406_200 Hb_000345_380--Hb_001409_020 Hb_010618_010 Hb_010618_010 Hb_001409_020--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_001409_020--Hb_001248_060 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_001409_020--Hb_008406_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.2805 23.7251 19.7356 24.4503 29.172 34.7501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.6848 17.2042 23.4708 21.413 18.7779

CAGE analysis