Hb_000173_490

Information

Type -
Description -
Location Contig173: 350645-356354
Sequence    

Annotation

kegg
ID rcu:RCOM_0678590
description TRANSPORT INHIBITOR RESPONSE 1 protein, putative
nr
ID XP_012069471.1
description PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
swissprot
ID Q9C5D2
description F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1
trembl
ID B9RSU6
description TRANSPORT INHIBITOR RESPONSE 1 protein, putative OS=Ricinus communis GN=RCOM_0678590 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box lrr-repeat protein 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16477: 350692-350837 , PASA_asmbl_16480: 353109-356441 , PASA_asmbl_16481: 354533-354728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_490 0.0 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
2 Hb_031284_040 0.0612399313 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
3 Hb_001409_020 0.0627422413 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
4 Hb_000030_190 0.0634732389 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
5 Hb_010618_010 0.0639461586 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
6 Hb_001248_060 0.0668494104 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001635_090 0.0673474017 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
8 Hb_000457_260 0.0678428553 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
9 Hb_008406_200 0.0687681247 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
10 Hb_123352_020 0.0694976153 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
11 Hb_000656_380 0.0703283586 - - PREDICTED: exportin-T [Jatropha curcas]
12 Hb_007576_110 0.070690776 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
13 Hb_167498_010 0.0719076545 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
14 Hb_001408_040 0.0720507388 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
15 Hb_007163_120 0.0721830615 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
16 Hb_000083_120 0.0723524294 - - transcription factor, putative [Ricinus communis]
17 Hb_000345_380 0.0728159132 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
18 Hb_003370_030 0.0735418382 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
19 Hb_000225_040 0.0742090021 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
20 Hb_004355_020 0.0744386425 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000173_490 Hb_000173_490 Hb_031284_040 Hb_031284_040 Hb_000173_490--Hb_031284_040 Hb_001409_020 Hb_001409_020 Hb_000173_490--Hb_001409_020 Hb_000030_190 Hb_000030_190 Hb_000173_490--Hb_000030_190 Hb_010618_010 Hb_010618_010 Hb_000173_490--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_000173_490--Hb_001248_060 Hb_001635_090 Hb_001635_090 Hb_000173_490--Hb_001635_090 Hb_000083_160 Hb_000083_160 Hb_031284_040--Hb_000083_160 Hb_007575_050 Hb_007575_050 Hb_031284_040--Hb_007575_050 Hb_004935_030 Hb_004935_030 Hb_031284_040--Hb_004935_030 Hb_000271_090 Hb_000271_090 Hb_031284_040--Hb_000271_090 Hb_008159_020 Hb_008159_020 Hb_031284_040--Hb_008159_020 Hb_001409_020--Hb_010618_010 Hb_001409_020--Hb_001248_060 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_008406_200 Hb_008406_200 Hb_001409_020--Hb_008406_200 Hb_007576_110 Hb_007576_110 Hb_001409_020--Hb_007576_110 Hb_000789_310 Hb_000789_310 Hb_000030_190--Hb_000789_310 Hb_005291_030 Hb_005291_030 Hb_000030_190--Hb_005291_030 Hb_000345_380 Hb_000345_380 Hb_000030_190--Hb_000345_380 Hb_000030_190--Hb_001409_020 Hb_000030_190--Hb_007576_110 Hb_010618_010--Hb_001248_060 Hb_015934_040 Hb_015934_040 Hb_010618_010--Hb_015934_040 Hb_000225_040 Hb_000225_040 Hb_010618_010--Hb_000225_040 Hb_002518_280 Hb_002518_280 Hb_010618_010--Hb_002518_280 Hb_011995_010 Hb_011995_010 Hb_010618_010--Hb_011995_010 Hb_001248_060--Hb_011995_010 Hb_000289_060 Hb_000289_060 Hb_001248_060--Hb_000289_060 Hb_001248_060--Hb_015934_040 Hb_001408_040 Hb_001408_040 Hb_001248_060--Hb_001408_040 Hb_001635_090--Hb_001408_040 Hb_000116_410 Hb_000116_410 Hb_001635_090--Hb_000116_410 Hb_001584_120 Hb_001584_120 Hb_001635_090--Hb_001584_120 Hb_001635_090--Hb_007576_110 Hb_000120_670 Hb_000120_670 Hb_001635_090--Hb_000120_670
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9438 15.8468 8.25573 10.546 10.6482 18.4907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3771 12.0362 12.3863 12.8132 8.53801

CAGE analysis