Hb_000083_160

Information

Type -
Description -
Location Contig83: 240108-241586
Sequence    

Annotation

kegg
ID rcu:RCOM_0884430
description Cell division cycle protein, putative
nr
ID XP_002522614.1
description Cell division cycle protein, putative [Ricinus communis]
swissprot
ID Q641C9
description Cell division cycle protein 123 homolog OS=Xenopus laevis GN=cdc123 PE=2 SV=1
trembl
ID B9S9E5
description Cell division cycle protein, putative OS=Ricinus communis GN=RCOM_0884430 PE=4 SV=1
Gene Ontology
ID GO:0006457
description cell division cycle protein 123 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59784: 241427-242586
cDNA
(Sanger)
(ID:Location)		 008_B15.ab1: 242233-242586

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_160 0.0 - - Cell division cycle protein, putative [Ricinus communis]
2 Hb_004935_030 0.0521477992 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
3 Hb_031284_040 0.0555538722 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
4 Hb_000271_090 0.0749354696 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_001617_060 0.0752544782 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
6 Hb_001635_090 0.0764344514 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
7 Hb_002235_170 0.0766307103 - - hypothetical protein CISIN_1g010208mg [Citrus sinensis]
8 Hb_008159_020 0.0768681421 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
9 Hb_003362_070 0.0781757017 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
10 Hb_001638_170 0.0786536054 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
11 Hb_103760_010 0.0790484198 - - serine/arginine rich splicing factor, putative [Ricinus communis]
12 Hb_000613_050 0.0803076317 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
13 Hb_000521_120 0.0806509296 - - PREDICTED: cyclic pyranopterin monophosphate synthase, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000127_040 0.0813569161 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
15 Hb_001314_010 0.0818585073 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Jatropha curcas]
16 Hb_000173_490 0.0822928007 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
17 Hb_006252_040 0.0838713967 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
18 Hb_005765_010 0.084804036 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Jatropha curcas]
19 Hb_000084_120 0.0851220674 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
20 Hb_004102_140 0.0857676399 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000083_160 Hb_000083_160 Hb_004935_030 Hb_004935_030 Hb_000083_160--Hb_004935_030 Hb_031284_040 Hb_031284_040 Hb_000083_160--Hb_031284_040 Hb_000271_090 Hb_000271_090 Hb_000083_160--Hb_000271_090 Hb_001617_060 Hb_001617_060 Hb_000083_160--Hb_001617_060 Hb_001635_090 Hb_001635_090 Hb_000083_160--Hb_001635_090 Hb_002235_170 Hb_002235_170 Hb_000083_160--Hb_002235_170 Hb_003362_070 Hb_003362_070 Hb_004935_030--Hb_003362_070 Hb_003371_110 Hb_003371_110 Hb_004935_030--Hb_003371_110 Hb_000457_260 Hb_000457_260 Hb_004935_030--Hb_000457_260 Hb_004935_030--Hb_001617_060 Hb_007576_110 Hb_007576_110 Hb_004935_030--Hb_007576_110 Hb_000173_490 Hb_000173_490 Hb_031284_040--Hb_000173_490 Hb_007575_050 Hb_007575_050 Hb_031284_040--Hb_007575_050 Hb_031284_040--Hb_004935_030 Hb_031284_040--Hb_000271_090 Hb_008159_020 Hb_008159_020 Hb_031284_040--Hb_008159_020 Hb_006157_020 Hb_006157_020 Hb_000271_090--Hb_006157_020 Hb_004429_100 Hb_004429_100 Hb_000271_090--Hb_004429_100 Hb_000084_120 Hb_000084_120 Hb_000271_090--Hb_000084_120 Hb_033834_060 Hb_033834_060 Hb_000271_090--Hb_033834_060 Hb_000613_080 Hb_000613_080 Hb_001617_060--Hb_000613_080 Hb_000470_070 Hb_000470_070 Hb_001617_060--Hb_000470_070 Hb_003966_030 Hb_003966_030 Hb_001617_060--Hb_003966_030 Hb_001617_060--Hb_003362_070 Hb_004102_140 Hb_004102_140 Hb_001617_060--Hb_004102_140 Hb_001408_040 Hb_001408_040 Hb_001635_090--Hb_001408_040 Hb_000116_410 Hb_000116_410 Hb_001635_090--Hb_000116_410 Hb_001584_120 Hb_001584_120 Hb_001635_090--Hb_001584_120 Hb_001635_090--Hb_007576_110 Hb_001635_090--Hb_000173_490 Hb_000120_670 Hb_000120_670 Hb_001635_090--Hb_000120_670 Hb_001492_020 Hb_001492_020 Hb_002235_170--Hb_001492_020 Hb_001314_010 Hb_001314_010 Hb_002235_170--Hb_001314_010 Hb_105328_020 Hb_105328_020 Hb_002235_170--Hb_105328_020 Hb_000127_040 Hb_000127_040 Hb_002235_170--Hb_000127_040 Hb_000862_030 Hb_000862_030 Hb_002235_170--Hb_000862_030 Hb_002213_070 Hb_002213_070 Hb_002235_170--Hb_002213_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.79975 4.38076 3.02953 4.64684 4.19148 8.94592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.55338 3.90734 3.53133 5.37714 3.05628

CAGE analysis