Hb_000116_410

Information

Type -
Description -
Location Contig116: 345617-348494
Sequence    

Annotation

kegg
ID rcu:RCOM_0280470
description hypothetical protein
nr
ID KDP43789.1
description hypothetical protein JCGZ_22416 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LHW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22416 PE=4 SV=1
Gene Ontology
ID GO:0005622
description vacuolar protein sorting-associated protein 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04881: 345612-347442
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_410 0.0 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
2 Hb_001635_090 0.063895076 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
3 Hb_010142_030 0.0723774604 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_000191_150 0.0732976656 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
5 Hb_004143_040 0.0771495113 - - argininosuccinate lyase, putative [Ricinus communis]
6 Hb_001178_070 0.0785805555 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
7 Hb_028285_010 0.0797823327 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
8 Hb_002662_020 0.0813891951 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
9 Hb_000023_280 0.0834658762 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
10 Hb_005048_130 0.0850716261 - - hypothetical protein POPTR_0004s03700g [Populus trichocarpa]
11 Hb_000200_120 0.0852408776 - - PREDICTED: probable fructose-bisphosphate aldolase 3, chloroplastic [Jatropha curcas]
12 Hb_000205_100 0.0859110295 - - PREDICTED: exportin-4 [Jatropha curcas]
13 Hb_002391_270 0.0885914186 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
14 Hb_001492_020 0.0893366978 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
15 Hb_000907_110 0.0902387763 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
16 Hb_031284_040 0.0908774933 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
17 Hb_001860_030 0.0917568409 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
18 Hb_000173_490 0.0920502483 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
19 Hb_000181_400 0.0926576426 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
20 Hb_003761_010 0.0926636619 - - alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000116_410 Hb_000116_410 Hb_001635_090 Hb_001635_090 Hb_000116_410--Hb_001635_090 Hb_010142_030 Hb_010142_030 Hb_000116_410--Hb_010142_030 Hb_000191_150 Hb_000191_150 Hb_000116_410--Hb_000191_150 Hb_004143_040 Hb_004143_040 Hb_000116_410--Hb_004143_040 Hb_001178_070 Hb_001178_070 Hb_000116_410--Hb_001178_070 Hb_028285_010 Hb_028285_010 Hb_000116_410--Hb_028285_010 Hb_001408_040 Hb_001408_040 Hb_001635_090--Hb_001408_040 Hb_001584_120 Hb_001584_120 Hb_001635_090--Hb_001584_120 Hb_007576_110 Hb_007576_110 Hb_001635_090--Hb_007576_110 Hb_000173_490 Hb_000173_490 Hb_001635_090--Hb_000173_490 Hb_000120_670 Hb_000120_670 Hb_001635_090--Hb_000120_670 Hb_003693_070 Hb_003693_070 Hb_010142_030--Hb_003693_070 Hb_000120_060 Hb_000120_060 Hb_010142_030--Hb_000120_060 Hb_000023_280 Hb_000023_280 Hb_010142_030--Hb_000023_280 Hb_003940_040 Hb_003940_040 Hb_010142_030--Hb_003940_040 Hb_010142_030--Hb_001635_090 Hb_002903_060 Hb_002903_060 Hb_000191_150--Hb_002903_060 Hb_000343_120 Hb_000343_120 Hb_000191_150--Hb_000343_120 Hb_123352_020 Hb_123352_020 Hb_000191_150--Hb_123352_020 Hb_000205_100 Hb_000205_100 Hb_000191_150--Hb_000205_100 Hb_005731_130 Hb_005731_130 Hb_000191_150--Hb_005731_130 Hb_004143_040--Hb_000023_280 Hb_003373_030 Hb_003373_030 Hb_004143_040--Hb_003373_030 Hb_002662_020 Hb_002662_020 Hb_004143_040--Hb_002662_020 Hb_003761_010 Hb_003761_010 Hb_004143_040--Hb_003761_010 Hb_001205_240 Hb_001205_240 Hb_004143_040--Hb_001205_240 Hb_009486_180 Hb_009486_180 Hb_001178_070--Hb_009486_180 Hb_001178_070--Hb_000205_100 Hb_000011_230 Hb_000011_230 Hb_001178_070--Hb_000011_230 Hb_000613_050 Hb_000613_050 Hb_001178_070--Hb_000613_050 Hb_004954_070 Hb_004954_070 Hb_001178_070--Hb_004954_070 Hb_000181_400 Hb_000181_400 Hb_001178_070--Hb_000181_400 Hb_000062_070 Hb_000062_070 Hb_028285_010--Hb_000062_070 Hb_005048_130 Hb_005048_130 Hb_028285_010--Hb_005048_130 Hb_000907_110 Hb_000907_110 Hb_028285_010--Hb_000907_110 Hb_028285_010--Hb_003761_010 Hb_028285_010--Hb_001408_040 Hb_014497_050 Hb_014497_050 Hb_028285_010--Hb_014497_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.19931 9.60931 4.07785 9.52595 8.52164 12.2055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.57092 8.30157 6.95292 12.2208 3.57758

CAGE analysis