Hb_000062_070

Information

Type transcription factor
Description TF Family: ARR-B
Location Contig62: 51710-58474
Sequence    

Annotation

kegg
ID rcu:RCOM_1082530
description two-component sensor histidine kinase bacteria, putative
nr
ID XP_002515018.1
description two-component sensor histidine kinase bacteria, putative [Ricinus communis]
swissprot
ID Q5Z5I4
description Probable transcription factor GLK1 OS=Oryza sativa subsp. japonica GN=GLK1 PE=2 SV=1
trembl
ID B9RMP9
description Two-component sensor histidine kinase bacteria, putative OS=Ricinus communis GN=RCOM_1082530 PE=4 SV=1
Gene Ontology
ID GO:0003677
description two-component response regulator arr11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51401: 51486-57969 , PASA_asmbl_51402: 51398-57969 , PASA_asmbl_51403: 54316-58260 , PASA_asmbl_51404: 54832-54943
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_070 0.0 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
2 Hb_028285_010 0.0612152104 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
3 Hb_005048_130 0.0712114286 - - hypothetical protein POPTR_0004s03700g [Populus trichocarpa]
4 Hb_002320_040 0.0742357094 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
5 Hb_000649_110 0.0852584749 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
6 Hb_005365_030 0.0924508516 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
7 Hb_034552_030 0.0931386275 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
8 Hb_000357_110 0.0948274375 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
9 Hb_024958_010 0.0977432983 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
10 Hb_013738_020 0.0984944903 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
11 Hb_000796_210 0.0994343256 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000907_110 0.0997016541 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
13 Hb_000116_410 0.0997251306 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
14 Hb_004837_240 0.0998602847 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
15 Hb_002391_270 0.1006005411 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
16 Hb_001221_110 0.1019659107 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
17 Hb_001408_040 0.1020268623 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
18 Hb_000530_010 0.1028779311 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Jatropha curcas]
19 Hb_001215_040 0.1036875619 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001221_430 0.1043884285 - - PREDICTED: F-box/LRR-repeat protein At5g63520 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000062_070 Hb_000062_070 Hb_028285_010 Hb_028285_010 Hb_000062_070--Hb_028285_010 Hb_005048_130 Hb_005048_130 Hb_000062_070--Hb_005048_130 Hb_002320_040 Hb_002320_040 Hb_000062_070--Hb_002320_040 Hb_000649_110 Hb_000649_110 Hb_000062_070--Hb_000649_110 Hb_005365_030 Hb_005365_030 Hb_000062_070--Hb_005365_030 Hb_034552_030 Hb_034552_030 Hb_000062_070--Hb_034552_030 Hb_028285_010--Hb_005048_130 Hb_000907_110 Hb_000907_110 Hb_028285_010--Hb_000907_110 Hb_003761_010 Hb_003761_010 Hb_028285_010--Hb_003761_010 Hb_001408_040 Hb_001408_040 Hb_028285_010--Hb_001408_040 Hb_014497_050 Hb_014497_050 Hb_028285_010--Hb_014497_050 Hb_112798_020 Hb_112798_020 Hb_005048_130--Hb_112798_020 Hb_005048_130--Hb_001408_040 Hb_010997_080 Hb_010997_080 Hb_005048_130--Hb_010997_080 Hb_000530_010 Hb_000530_010 Hb_005048_130--Hb_000530_010 Hb_024958_010 Hb_024958_010 Hb_002320_040--Hb_024958_010 Hb_000684_380 Hb_000684_380 Hb_002320_040--Hb_000684_380 Hb_002320_040--Hb_034552_030 Hb_002936_010 Hb_002936_010 Hb_002320_040--Hb_002936_010 Hb_004837_240 Hb_004837_240 Hb_002320_040--Hb_004837_240 Hb_001221_110 Hb_001221_110 Hb_000649_110--Hb_001221_110 Hb_000028_370 Hb_000028_370 Hb_000649_110--Hb_000028_370 Hb_002205_110 Hb_002205_110 Hb_000649_110--Hb_002205_110 Hb_008725_230 Hb_008725_230 Hb_000649_110--Hb_008725_230 Hb_001359_050 Hb_001359_050 Hb_000649_110--Hb_001359_050 Hb_000886_050 Hb_000886_050 Hb_000649_110--Hb_000886_050 Hb_124953_020 Hb_124953_020 Hb_005365_030--Hb_124953_020 Hb_029388_020 Hb_029388_020 Hb_005365_030--Hb_029388_020 Hb_002078_140 Hb_002078_140 Hb_005365_030--Hb_002078_140 Hb_005365_030--Hb_002320_040 Hb_001691_140 Hb_001691_140 Hb_005365_030--Hb_001691_140 Hb_027472_040 Hb_027472_040 Hb_005365_030--Hb_027472_040 Hb_006588_200 Hb_006588_200 Hb_034552_030--Hb_006588_200 Hb_000020_150 Hb_000020_150 Hb_034552_030--Hb_000020_150 Hb_003464_080 Hb_003464_080 Hb_034552_030--Hb_003464_080 Hb_028872_090 Hb_028872_090 Hb_034552_030--Hb_028872_090 Hb_000120_430 Hb_000120_430 Hb_034552_030--Hb_000120_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.99666 14.4133 8.45516 12.7827 10.8595 10.0716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4797 14.702 8.88007 14.4597 3.08303

CAGE analysis