Hb_034552_030

Information

Type -
Description -
Location Contig34552: 7464-7907
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06660g
description POPTRDRAFT_765552; pleckstrin homology domain-containing family protein
nr
ID XP_012087668.1
description PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q9ST43
description Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2
trembl
ID A0A067LC64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01298 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36080: 7337-8012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034552_030 0.0 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
2 Hb_002320_040 0.0718336538 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
3 Hb_006588_200 0.0831063875 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
4 Hb_000020_150 0.085879968 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
5 Hb_003464_080 0.085900331 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
6 Hb_028872_090 0.0877144966 - - PREDICTED: urease [Jatropha curcas]
7 Hb_000120_430 0.0902643432 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
8 Hb_003549_150 0.0928458716 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
9 Hb_000062_070 0.0931386275 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
10 Hb_001780_020 0.100695379 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000331_060 0.1013274605 - - PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Jatropha curcas]
12 Hb_000025_180 0.1030094177 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
13 Hb_000163_220 0.1036693045 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
14 Hb_001635_090 0.1039552384 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
15 Hb_004787_110 0.1043291426 - - conserved hypothetical protein [Ricinus communis]
16 Hb_028285_010 0.1045946409 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
17 Hb_158062_010 0.1046528412 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
18 Hb_003528_010 0.104966634 transcription factor TF Family: MYB PREDICTED: myb-related protein 3R-1 [Jatropha curcas]
19 Hb_003185_010 0.1053465274 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
20 Hb_000200_120 0.105387138 - - PREDICTED: probable fructose-bisphosphate aldolase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_034552_030 Hb_034552_030 Hb_002320_040 Hb_002320_040 Hb_034552_030--Hb_002320_040 Hb_006588_200 Hb_006588_200 Hb_034552_030--Hb_006588_200 Hb_000020_150 Hb_000020_150 Hb_034552_030--Hb_000020_150 Hb_003464_080 Hb_003464_080 Hb_034552_030--Hb_003464_080 Hb_028872_090 Hb_028872_090 Hb_034552_030--Hb_028872_090 Hb_000120_430 Hb_000120_430 Hb_034552_030--Hb_000120_430 Hb_024958_010 Hb_024958_010 Hb_002320_040--Hb_024958_010 Hb_000684_380 Hb_000684_380 Hb_002320_040--Hb_000684_380 Hb_002936_010 Hb_002936_010 Hb_002320_040--Hb_002936_010 Hb_004837_240 Hb_004837_240 Hb_002320_040--Hb_004837_240 Hb_000062_070 Hb_000062_070 Hb_002320_040--Hb_000062_070 Hb_003185_010 Hb_003185_010 Hb_006588_200--Hb_003185_010 Hb_001780_020 Hb_001780_020 Hb_006588_200--Hb_001780_020 Hb_003549_150 Hb_003549_150 Hb_006588_200--Hb_003549_150 Hb_003528_010 Hb_003528_010 Hb_006588_200--Hb_003528_010 Hb_003994_230 Hb_003994_230 Hb_006588_200--Hb_003994_230 Hb_000020_150--Hb_028872_090 Hb_000020_150--Hb_000120_430 Hb_063716_100 Hb_063716_100 Hb_000020_150--Hb_063716_100 Hb_000221_250 Hb_000221_250 Hb_000020_150--Hb_000221_250 Hb_033834_030 Hb_033834_030 Hb_000020_150--Hb_033834_030 Hb_183612_040 Hb_183612_040 Hb_000020_150--Hb_183612_040 Hb_002217_030 Hb_002217_030 Hb_003464_080--Hb_002217_030 Hb_000089_120 Hb_000089_120 Hb_003464_080--Hb_000089_120 Hb_000200_120 Hb_000200_120 Hb_003464_080--Hb_000200_120 Hb_143629_110 Hb_143629_110 Hb_003464_080--Hb_143629_110 Hb_116349_070 Hb_116349_070 Hb_003464_080--Hb_116349_070 Hb_001635_090 Hb_001635_090 Hb_003464_080--Hb_001635_090 Hb_000163_220 Hb_000163_220 Hb_028872_090--Hb_000163_220 Hb_002784_020 Hb_002784_020 Hb_028872_090--Hb_002784_020 Hb_028872_090--Hb_063716_100 Hb_028872_090--Hb_000089_120 Hb_003861_050 Hb_003861_050 Hb_028872_090--Hb_003861_050 Hb_004631_180 Hb_004631_180 Hb_000120_430--Hb_004631_180 Hb_001051_080 Hb_001051_080 Hb_000120_430--Hb_001051_080 Hb_000617_100 Hb_000617_100 Hb_000120_430--Hb_000617_100 Hb_000120_430--Hb_033834_030 Hb_000120_430--Hb_116349_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.8504 25.5779 29.4903 34.3452 35.4084 34.1796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.8059 34.4714 20.2187 43.459 7.02946

CAGE analysis