Hb_003185_010

Information

Type -
Description -
Location Contig3185: 3308-5592
Sequence    

Annotation

kegg
ID tcc:TCM_038351
description ATPase, F0/V0 complex, subunit C protein
nr
ID XP_012076641.1
description PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
swissprot
ID Q9SZY7
description V-type proton ATPase subunit c''1 OS=Arabidopsis thaliana GN=VHA-c''1 PE=1 SV=1
trembl
ID A0A067KF68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07209 PE=3 SV=1
Gene Ontology
ID GO:0016021
description v-type proton atpase subunit c 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33592: 3404-5501
cDNA
(Sanger)
(ID:Location)		 004_A06.ab1: 3438-5292 , 022_M08.ab1: 3438-5166

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003185_010 0.0 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
2 Hb_006588_200 0.0677012756 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
3 Hb_007416_300 0.0708489258 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
4 Hb_010381_090 0.0751808326 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
5 Hb_000317_470 0.0780295988 - - PREDICTED: CCR4-NOT transcription complex subunit 11 [Jatropha curcas]
6 Hb_003549_150 0.0798099466 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
7 Hb_003994_230 0.0799895402 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
8 Hb_014720_120 0.0813522984 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]
9 Hb_003964_070 0.0816749222 - - hypothetical protein JCGZ_15695 [Jatropha curcas]
10 Hb_000297_160 0.0820597119 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
11 Hb_005144_090 0.0828430263 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
12 Hb_001357_350 0.0856107693 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002272_050 0.0866991927 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
14 Hb_000720_040 0.0870342326 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
15 Hb_000649_230 0.0871643566 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
16 Hb_002783_170 0.0893904674 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
17 Hb_123915_040 0.0898228373 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
18 Hb_003893_030 0.0901198973 - - Protein yrdA, putative [Ricinus communis]
19 Hb_011618_050 0.0903030415 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
20 Hb_172632_120 0.090385081 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003185_010 Hb_003185_010 Hb_006588_200 Hb_006588_200 Hb_003185_010--Hb_006588_200 Hb_007416_300 Hb_007416_300 Hb_003185_010--Hb_007416_300 Hb_010381_090 Hb_010381_090 Hb_003185_010--Hb_010381_090 Hb_000317_470 Hb_000317_470 Hb_003185_010--Hb_000317_470 Hb_003549_150 Hb_003549_150 Hb_003185_010--Hb_003549_150 Hb_003994_230 Hb_003994_230 Hb_003185_010--Hb_003994_230 Hb_001780_020 Hb_001780_020 Hb_006588_200--Hb_001780_020 Hb_006588_200--Hb_003549_150 Hb_003528_010 Hb_003528_010 Hb_006588_200--Hb_003528_010 Hb_034552_030 Hb_034552_030 Hb_006588_200--Hb_034552_030 Hb_006588_200--Hb_003994_230 Hb_007416_300--Hb_010381_090 Hb_001051_080 Hb_001051_080 Hb_007416_300--Hb_001051_080 Hb_002872_030 Hb_002872_030 Hb_007416_300--Hb_002872_030 Hb_007416_300--Hb_003549_150 Hb_033642_030 Hb_033642_030 Hb_007416_300--Hb_033642_030 Hb_008453_140 Hb_008453_140 Hb_007416_300--Hb_008453_140 Hb_010381_090--Hb_002872_030 Hb_010381_090--Hb_008453_140 Hb_120410_010 Hb_120410_010 Hb_010381_090--Hb_120410_010 Hb_001142_030 Hb_001142_030 Hb_010381_090--Hb_001142_030 Hb_010381_090--Hb_003549_150 Hb_123915_040 Hb_123915_040 Hb_000317_470--Hb_123915_040 Hb_032986_010 Hb_032986_010 Hb_000317_470--Hb_032986_010 Hb_000522_170 Hb_000522_170 Hb_000317_470--Hb_000522_170 Hb_003163_020 Hb_003163_020 Hb_000317_470--Hb_003163_020 Hb_000317_470--Hb_007416_300 Hb_002272_130 Hb_002272_130 Hb_000317_470--Hb_002272_130 Hb_000603_150 Hb_000603_150 Hb_003549_150--Hb_000603_150 Hb_000617_100 Hb_000617_100 Hb_003549_150--Hb_000617_100 Hb_003549_150--Hb_001051_080 Hb_001408_040 Hb_001408_040 Hb_003549_150--Hb_001408_040 Hb_000948_230 Hb_000948_230 Hb_003994_230--Hb_000948_230 Hb_000720_040 Hb_000720_040 Hb_003994_230--Hb_000720_040 Hb_001318_280 Hb_001318_280 Hb_003994_230--Hb_001318_280 Hb_001511_060 Hb_001511_060 Hb_003994_230--Hb_001511_060 Hb_002936_010 Hb_002936_010 Hb_003994_230--Hb_002936_010 Hb_001427_160 Hb_001427_160 Hb_003994_230--Hb_001427_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.5827 15.15 28.6582 30.0943 30.7593 21.2557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.3613 25.62 19.4618 22.0469 11.2018

CAGE analysis