Hb_001427_160

Information

Type -
Description -
Location Contig1427: 151749-153943
Sequence    

Annotation

kegg
ID rcu:RCOM_1048190
description o-methyltransferase, putative (EC:2.1.1.104)
nr
ID XP_002514167.1
description o-methyltransferase, putative [Ricinus communis]
swissprot
ID Q9C5D7
description Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1
trembl
ID B9RKC3
description O-methyltransferase, putative OS=Ricinus communis GN=RCOM_1048190 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable caffeoyl- o-methyltransferase at4g26220

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11323: 152132-153940
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001427_160 0.0 - - o-methyltransferase, putative [Ricinus communis]
2 Hb_009787_030 0.0604666514 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
3 Hb_002053_140 0.063800746 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
4 Hb_000510_300 0.0656882424 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
5 Hb_003994_230 0.0667740543 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
6 Hb_001366_370 0.06918872 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
7 Hb_001703_060 0.0692710831 - - protein kinase, putative [Ricinus communis]
8 Hb_030736_020 0.0717734509 - - conserved hypothetical protein [Ricinus communis]
9 Hb_168978_010 0.0746843053 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
10 Hb_000141_080 0.0774048113 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
11 Hb_004627_040 0.0781955068 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
12 Hb_000200_020 0.0803372658 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
13 Hb_000331_200 0.080750463 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
14 Hb_052805_010 0.0816661 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
15 Hb_000666_100 0.0824902018 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
16 Hb_001159_130 0.084000693 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
17 Hb_002641_060 0.0848911899 - - prefoldin subunit, putative [Ricinus communis]
18 Hb_000260_350 0.0856355732 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011344_120 0.0857413265 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
20 Hb_001225_080 0.0857911018 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Populus euphratica]

Gene co-expression network

sample Hb_001427_160 Hb_001427_160 Hb_009787_030 Hb_009787_030 Hb_001427_160--Hb_009787_030 Hb_002053_140 Hb_002053_140 Hb_001427_160--Hb_002053_140 Hb_000510_300 Hb_000510_300 Hb_001427_160--Hb_000510_300 Hb_003994_230 Hb_003994_230 Hb_001427_160--Hb_003994_230 Hb_001366_370 Hb_001366_370 Hb_001427_160--Hb_001366_370 Hb_001703_060 Hb_001703_060 Hb_001427_160--Hb_001703_060 Hb_009787_030--Hb_001366_370 Hb_011344_120 Hb_011344_120 Hb_009787_030--Hb_011344_120 Hb_000141_080 Hb_000141_080 Hb_009787_030--Hb_000141_080 Hb_000115_150 Hb_000115_150 Hb_009787_030--Hb_000115_150 Hb_009787_030--Hb_002053_140 Hb_030736_020 Hb_030736_020 Hb_002053_140--Hb_030736_020 Hb_002053_140--Hb_000141_080 Hb_003929_270 Hb_003929_270 Hb_002053_140--Hb_003929_270 Hb_002053_140--Hb_001366_370 Hb_012796_020 Hb_012796_020 Hb_002053_140--Hb_012796_020 Hb_000783_010 Hb_000783_010 Hb_000510_300--Hb_000783_010 Hb_000510_300--Hb_001703_060 Hb_168978_010 Hb_168978_010 Hb_000510_300--Hb_168978_010 Hb_000720_040 Hb_000720_040 Hb_000510_300--Hb_000720_040 Hb_000510_300--Hb_001366_370 Hb_000948_230 Hb_000948_230 Hb_003994_230--Hb_000948_230 Hb_003994_230--Hb_000720_040 Hb_001318_280 Hb_001318_280 Hb_003994_230--Hb_001318_280 Hb_001511_060 Hb_001511_060 Hb_003994_230--Hb_001511_060 Hb_002936_010 Hb_002936_010 Hb_003994_230--Hb_002936_010 Hb_000200_020 Hb_000200_020 Hb_001366_370--Hb_000200_020 Hb_001366_370--Hb_000783_010 Hb_000331_200 Hb_000331_200 Hb_001703_060--Hb_000331_200 Hb_000030_030 Hb_000030_030 Hb_001703_060--Hb_000030_030 Hb_001225_080 Hb_001225_080 Hb_001703_060--Hb_001225_080 Hb_000081_160 Hb_000081_160 Hb_001703_060--Hb_000081_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1391 12.6401 18.8393 39.8106 21.5745 18.2059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.7998 27.6444 21.9885 21.9564 15.2474

CAGE analysis