Hb_000510_300

Information

Type -
Description -
Location Contig510: 285851-290563
Sequence    

Annotation

kegg
ID rcu:RCOM_0991600
description NADH-ubiquinone oxidoreductase 24 kD subunit, putative (EC:1.6.5.3)
nr
ID XP_012092116.1
description PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
swissprot
ID O22769
description NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g02580 PE=2 SV=3
trembl
ID A0A067JF27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21844 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46309: 285864-290407 , PASA_asmbl_46310: 285897-289969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_300 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
2 Hb_000783_010 0.0592563802 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
3 Hb_001703_060 0.063267046 - - protein kinase, putative [Ricinus communis]
4 Hb_001427_160 0.0656882424 - - o-methyltransferase, putative [Ricinus communis]
5 Hb_168978_010 0.066542353 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
6 Hb_000720_040 0.071568828 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
7 Hb_001366_370 0.072688887 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
8 Hb_004108_220 0.0764170928 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
9 Hb_052805_010 0.0764375509 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
10 Hb_002301_150 0.0786357553 - - Drought-responsive family protein [Theobroma cacao]
11 Hb_007878_010 0.0787892814 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
12 Hb_002936_010 0.0804121186 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
13 Hb_000030_030 0.0852232476 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
14 Hb_000200_020 0.0872048505 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
15 Hb_161574_020 0.0872997745 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
16 Hb_002641_060 0.0877084642 - - prefoldin subunit, putative [Ricinus communis]
17 Hb_000453_160 0.0884481446 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
18 Hb_005588_060 0.0885166769 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
19 Hb_154948_040 0.0888855809 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
20 Hb_001278_100 0.0901715069 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]

Gene co-expression network

sample Hb_000510_300 Hb_000510_300 Hb_000783_010 Hb_000783_010 Hb_000510_300--Hb_000783_010 Hb_001703_060 Hb_001703_060 Hb_000510_300--Hb_001703_060 Hb_001427_160 Hb_001427_160 Hb_000510_300--Hb_001427_160 Hb_168978_010 Hb_168978_010 Hb_000510_300--Hb_168978_010 Hb_000720_040 Hb_000720_040 Hb_000510_300--Hb_000720_040 Hb_001366_370 Hb_001366_370 Hb_000510_300--Hb_001366_370 Hb_000200_020 Hb_000200_020 Hb_000783_010--Hb_000200_020 Hb_000783_010--Hb_001366_370 Hb_000783_010--Hb_000720_040 Hb_011628_060 Hb_011628_060 Hb_000783_010--Hb_011628_060 Hb_000331_180 Hb_000331_180 Hb_000783_010--Hb_000331_180 Hb_000331_200 Hb_000331_200 Hb_001703_060--Hb_000331_200 Hb_000030_030 Hb_000030_030 Hb_001703_060--Hb_000030_030 Hb_001703_060--Hb_001427_160 Hb_001225_080 Hb_001225_080 Hb_001703_060--Hb_001225_080 Hb_000081_160 Hb_000081_160 Hb_001703_060--Hb_000081_160 Hb_009787_030 Hb_009787_030 Hb_001427_160--Hb_009787_030 Hb_002053_140 Hb_002053_140 Hb_001427_160--Hb_002053_140 Hb_003994_230 Hb_003994_230 Hb_001427_160--Hb_003994_230 Hb_001427_160--Hb_001366_370 Hb_001511_060 Hb_001511_060 Hb_168978_010--Hb_001511_060 Hb_000359_060 Hb_000359_060 Hb_168978_010--Hb_000359_060 Hb_000260_350 Hb_000260_350 Hb_168978_010--Hb_000260_350 Hb_093458_040 Hb_093458_040 Hb_168978_010--Hb_093458_040 Hb_149985_010 Hb_149985_010 Hb_168978_010--Hb_149985_010 Hb_168978_010--Hb_000030_030 Hb_000300_500 Hb_000300_500 Hb_000720_040--Hb_000300_500 Hb_000720_040--Hb_003994_230 Hb_052805_010 Hb_052805_010 Hb_000720_040--Hb_052805_010 Hb_002936_010 Hb_002936_010 Hb_000720_040--Hb_002936_010 Hb_000948_230 Hb_000948_230 Hb_000720_040--Hb_000948_230 Hb_001366_370--Hb_000200_020 Hb_001366_370--Hb_002053_140 Hb_001366_370--Hb_009787_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.5701 27.4942 41.4592 68.7852 26.5136 36.1065
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.9797 52.8422 34.8096 37.1092 23.9327

CAGE analysis