Hb_000331_180

Information

Type transcription factor
Description TF Family: mTERF
Location Contig331: 150582-151958
Sequence    

Annotation

kegg
ID rcu:RCOM_1506670
description hypothetical protein
nr
ID XP_012079868.1
description PREDICTED: uncharacterized protein LOC105640220 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K489
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11318 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial transcription termination factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34771: 150131-150728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_180 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640220 [Jatropha curcas]
2 Hb_000783_010 0.0751517341 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
3 Hb_000034_070 0.0850596479 - - PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like [Jatropha curcas]
4 Hb_032808_010 0.0882590288 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
5 Hb_001366_370 0.0912611414 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
6 Hb_000510_300 0.0930326555 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
7 Hb_002445_060 0.0946575992 - - arf gtpase-activating protein, putative [Ricinus communis]
8 Hb_003058_120 0.0950719353 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
9 Hb_000381_120 0.0970400411 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
10 Hb_000853_150 0.0973484782 - - Fumarase 1 isoform 2 [Theobroma cacao]
11 Hb_002301_150 0.0976921696 - - Drought-responsive family protein [Theobroma cacao]
12 Hb_003994_290 0.101044944 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Jatropha curcas]
13 Hb_008013_050 0.1011470569 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
14 Hb_165928_030 0.1015376134 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000720_040 0.1033957449 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
16 Hb_002936_010 0.1038769628 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
17 Hb_004044_040 0.1048355469 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
18 Hb_001584_120 0.105044195 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
19 Hb_000665_050 0.1052169549 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
20 Hb_002217_350 0.1052934201 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000331_180 Hb_000331_180 Hb_000783_010 Hb_000783_010 Hb_000331_180--Hb_000783_010 Hb_000034_070 Hb_000034_070 Hb_000331_180--Hb_000034_070 Hb_032808_010 Hb_032808_010 Hb_000331_180--Hb_032808_010 Hb_001366_370 Hb_001366_370 Hb_000331_180--Hb_001366_370 Hb_000510_300 Hb_000510_300 Hb_000331_180--Hb_000510_300 Hb_002445_060 Hb_002445_060 Hb_000331_180--Hb_002445_060 Hb_000783_010--Hb_000510_300 Hb_000200_020 Hb_000200_020 Hb_000783_010--Hb_000200_020 Hb_000783_010--Hb_001366_370 Hb_000720_040 Hb_000720_040 Hb_000783_010--Hb_000720_040 Hb_011628_060 Hb_011628_060 Hb_000783_010--Hb_011628_060 Hb_002675_140 Hb_002675_140 Hb_000034_070--Hb_002675_140 Hb_001348_020 Hb_001348_020 Hb_000034_070--Hb_001348_020 Hb_000034_070--Hb_001366_370 Hb_073973_100 Hb_073973_100 Hb_000034_070--Hb_073973_100 Hb_000181_050 Hb_000181_050 Hb_000034_070--Hb_000181_050 Hb_005730_120 Hb_005730_120 Hb_032808_010--Hb_005730_120 Hb_005271_220 Hb_005271_220 Hb_032808_010--Hb_005271_220 Hb_008511_120 Hb_008511_120 Hb_032808_010--Hb_008511_120 Hb_002303_070 Hb_002303_070 Hb_032808_010--Hb_002303_070 Hb_003994_290 Hb_003994_290 Hb_032808_010--Hb_003994_290 Hb_003376_330 Hb_003376_330 Hb_032808_010--Hb_003376_330 Hb_001366_370--Hb_000200_020 Hb_002053_140 Hb_002053_140 Hb_001366_370--Hb_002053_140 Hb_001427_160 Hb_001427_160 Hb_001366_370--Hb_001427_160 Hb_009787_030 Hb_009787_030 Hb_001366_370--Hb_009787_030 Hb_001366_370--Hb_000510_300 Hb_001703_060 Hb_001703_060 Hb_000510_300--Hb_001703_060 Hb_000510_300--Hb_001427_160 Hb_168978_010 Hb_168978_010 Hb_000510_300--Hb_168978_010 Hb_000510_300--Hb_000720_040 Hb_000215_300 Hb_000215_300 Hb_002445_060--Hb_000215_300 Hb_006059_040 Hb_006059_040 Hb_002445_060--Hb_006059_040 Hb_000140_290 Hb_000140_290 Hb_002445_060--Hb_000140_290 Hb_006588_170 Hb_006588_170 Hb_002445_060--Hb_006588_170 Hb_004705_170 Hb_004705_170 Hb_002445_060--Hb_004705_170 Hb_003177_020 Hb_003177_020 Hb_002445_060--Hb_003177_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.68566 1.40816 3.05619 3.39399 0.994969 2.45147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.37948 3.06552 2.0825 3.44779 1.58312

CAGE analysis