Hb_001348_020

Information

Type -
Description -
Location Contig1348: 19032-22337
Sequence    

Annotation

kegg
ID pop:POPTR_0005s19940g
description POPTRDRAFT_651405; hypothetical protein
nr
ID XP_012078225.1
description PREDICTED: uncharacterized protein LOC105638926 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9A1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12083 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09785: 19233-19779 , PASA_asmbl_09786: 19803-20117 , PASA_asmbl_09787: 20730-21580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001348_020 0.0 - - PREDICTED: uncharacterized protein LOC105638926 isoform X2 [Jatropha curcas]
2 Hb_062537_010 0.0717292887 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
3 Hb_000228_110 0.0717352783 - - unnamed protein product [Vitis vinifera]
4 Hb_011628_060 0.0751143998 - - Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]
5 Hb_000111_320 0.0761916954 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
6 Hb_000392_430 0.076990016 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
7 Hb_023001_040 0.0875437912 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
8 Hb_001366_370 0.0878178654 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
9 Hb_001314_050 0.0881021067 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
10 Hb_000381_120 0.0885341602 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
11 Hb_000115_150 0.0886635934 - - PREDICTED: IST1 homolog [Jatropha curcas]
12 Hb_000095_080 0.0901230279 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
13 Hb_000034_070 0.0902115855 - - PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like [Jatropha curcas]
14 Hb_000329_060 0.0903506028 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
15 Hb_009787_030 0.0921715031 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
16 Hb_001085_240 0.093042045 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
17 Hb_003813_050 0.0934057028 - - PREDICTED: tRNA-specific adenosine deaminase 2-like isoform X1 [Jatropha curcas]
18 Hb_001189_070 0.0943163787 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
19 Hb_031862_100 0.0946231051 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_001016_120 0.0949160385 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001348_020 Hb_001348_020 Hb_062537_010 Hb_062537_010 Hb_001348_020--Hb_062537_010 Hb_000228_110 Hb_000228_110 Hb_001348_020--Hb_000228_110 Hb_011628_060 Hb_011628_060 Hb_001348_020--Hb_011628_060 Hb_000111_320 Hb_000111_320 Hb_001348_020--Hb_000111_320 Hb_000392_430 Hb_000392_430 Hb_001348_020--Hb_000392_430 Hb_023001_040 Hb_023001_040 Hb_001348_020--Hb_023001_040 Hb_000025_190 Hb_000025_190 Hb_062537_010--Hb_000025_190 Hb_000115_150 Hb_000115_150 Hb_062537_010--Hb_000115_150 Hb_062537_010--Hb_023001_040 Hb_003988_050 Hb_003988_050 Hb_062537_010--Hb_003988_050 Hb_000258_240 Hb_000258_240 Hb_062537_010--Hb_000258_240 Hb_000096_160 Hb_000096_160 Hb_000228_110--Hb_000096_160 Hb_019053_030 Hb_019053_030 Hb_000228_110--Hb_019053_030 Hb_001085_240 Hb_001085_240 Hb_000228_110--Hb_001085_240 Hb_002889_030 Hb_002889_030 Hb_000228_110--Hb_002889_030 Hb_003633_050 Hb_003633_050 Hb_000228_110--Hb_003633_050 Hb_172632_100 Hb_172632_100 Hb_011628_060--Hb_172632_100 Hb_000783_010 Hb_000783_010 Hb_011628_060--Hb_000783_010 Hb_003528_030 Hb_003528_030 Hb_011628_060--Hb_003528_030 Hb_008616_050 Hb_008616_050 Hb_011628_060--Hb_008616_050 Hb_000200_020 Hb_000200_020 Hb_011628_060--Hb_000200_020 Hb_004109_340 Hb_004109_340 Hb_011628_060--Hb_004109_340 Hb_000111_320--Hb_000392_430 Hb_000466_140 Hb_000466_140 Hb_000111_320--Hb_000466_140 Hb_001314_050 Hb_001314_050 Hb_000111_320--Hb_001314_050 Hb_001247_310 Hb_001247_310 Hb_000111_320--Hb_001247_310 Hb_000138_100 Hb_000138_100 Hb_000111_320--Hb_000138_100 Hb_002811_180 Hb_002811_180 Hb_000111_320--Hb_002811_180 Hb_000392_430--Hb_001314_050 Hb_001671_100 Hb_001671_100 Hb_000392_430--Hb_001671_100 Hb_000392_430--Hb_002811_180 Hb_000948_160 Hb_000948_160 Hb_000392_430--Hb_000948_160 Hb_000392_430--Hb_000466_140 Hb_003058_120 Hb_003058_120 Hb_023001_040--Hb_003058_120 Hb_149985_010 Hb_149985_010 Hb_023001_040--Hb_149985_010 Hb_005588_060 Hb_005588_060 Hb_023001_040--Hb_005588_060 Hb_000663_060 Hb_000663_060 Hb_023001_040--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_023001_040--Hb_001828_180 Hb_000167_010 Hb_000167_010 Hb_023001_040--Hb_000167_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.743354 0.391968 0.743489 1.52261 0.691324 1.00141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.89206 1.13364 0.808724 1.72585 0.900249

CAGE analysis