Hb_002889_030

Information

Type -
Description -
Location Contig2889: 76618-86060
Sequence    

Annotation

kegg
ID rcu:RCOM_1266070
description hypothetical protein
nr
ID XP_012066226.1
description PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
swissprot
ID Q0WMN5
description Uncharacterized protein At3g49140 OS=Arabidopsis thaliana GN=At3g49140 PE=1 SV=2
trembl
ID A0A067L6K8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23800 PE=4 SV=1
Gene Ontology
ID GO:0010181
description pentatricopeptide repeat superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30156: 76746-80286 , PASA_asmbl_30159: 80307-84073 , PASA_asmbl_30161: 84210-85852
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002889_030 0.0 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
2 Hb_000181_050 0.0796477879 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
3 Hb_000504_070 0.0856873603 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
4 Hb_000228_110 0.0895400336 - - unnamed protein product [Vitis vinifera]
5 Hb_003813_050 0.0927567161 - - PREDICTED: tRNA-specific adenosine deaminase 2-like isoform X1 [Jatropha curcas]
6 Hb_033501_010 0.096106242 - - hypothetical protein JCGZ_21381 [Jatropha curcas]
7 Hb_019053_030 0.0993376501 - - PREDICTED: sulfite oxidase [Jatropha curcas]
8 Hb_002400_410 0.1025978271 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
9 Hb_001018_050 0.1036195036 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
10 Hb_028227_070 0.104040694 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
11 Hb_000034_070 0.1044972861 - - PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like [Jatropha curcas]
12 Hb_001348_020 0.1046366657 - - PREDICTED: uncharacterized protein LOC105638926 isoform X2 [Jatropha curcas]
13 Hb_001584_120 0.1072332884 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
14 Hb_119530_010 0.1084705769 - - -
15 Hb_006452_100 0.1087899986 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
16 Hb_007416_120 0.1088230357 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
17 Hb_000152_660 0.109105981 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
18 Hb_001434_080 0.1100656642 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
19 Hb_002344_060 0.1117639367 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
20 Hb_003544_030 0.1122288815 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]

Gene co-expression network

sample Hb_002889_030 Hb_002889_030 Hb_000181_050 Hb_000181_050 Hb_002889_030--Hb_000181_050 Hb_000504_070 Hb_000504_070 Hb_002889_030--Hb_000504_070 Hb_000228_110 Hb_000228_110 Hb_002889_030--Hb_000228_110 Hb_003813_050 Hb_003813_050 Hb_002889_030--Hb_003813_050 Hb_033501_010 Hb_033501_010 Hb_002889_030--Hb_033501_010 Hb_019053_030 Hb_019053_030 Hb_002889_030--Hb_019053_030 Hb_000181_050--Hb_003813_050 Hb_001085_240 Hb_001085_240 Hb_000181_050--Hb_001085_240 Hb_000034_070 Hb_000034_070 Hb_000181_050--Hb_000034_070 Hb_000096_160 Hb_000096_160 Hb_000181_050--Hb_000096_160 Hb_002675_140 Hb_002675_140 Hb_000181_050--Hb_002675_140 Hb_028227_070 Hb_028227_070 Hb_000504_070--Hb_028227_070 Hb_007416_120 Hb_007416_120 Hb_000504_070--Hb_007416_120 Hb_002534_120 Hb_002534_120 Hb_000504_070--Hb_002534_120 Hb_006452_100 Hb_006452_100 Hb_000504_070--Hb_006452_100 Hb_005914_170 Hb_005914_170 Hb_000504_070--Hb_005914_170 Hb_000175_540 Hb_000175_540 Hb_000504_070--Hb_000175_540 Hb_001348_020 Hb_001348_020 Hb_000228_110--Hb_001348_020 Hb_000228_110--Hb_000096_160 Hb_000228_110--Hb_019053_030 Hb_000228_110--Hb_001085_240 Hb_003633_050 Hb_003633_050 Hb_000228_110--Hb_003633_050 Hb_000312_080 Hb_000312_080 Hb_003813_050--Hb_000312_080 Hb_005725_270 Hb_005725_270 Hb_003813_050--Hb_005725_270 Hb_002197_050 Hb_002197_050 Hb_003813_050--Hb_002197_050 Hb_003813_050--Hb_001348_020 Hb_003253_050 Hb_003253_050 Hb_033501_010--Hb_003253_050 Hb_119530_010 Hb_119530_010 Hb_033501_010--Hb_119530_010 Hb_033501_010--Hb_000181_050 Hb_003906_170 Hb_003906_170 Hb_033501_010--Hb_003906_170 Hb_002391_270 Hb_002391_270 Hb_033501_010--Hb_002391_270 Hb_005147_030 Hb_005147_030 Hb_019053_030--Hb_005147_030 Hb_000031_120 Hb_000031_120 Hb_019053_030--Hb_000031_120 Hb_003747_020 Hb_003747_020 Hb_019053_030--Hb_003747_020 Hb_019053_030--Hb_000181_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.48576 6.68897 6.77526 11.253 5.17578 9.77618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.65024 9.56364 8.21314 21.1668 5.11143

CAGE analysis