Hb_003813_050

Information

Type -
Description -
Location Contig3813: 29923-33285
Sequence    

Annotation

kegg
ID rcu:RCOM_1056370
description tRNA-specific adenosine deaminase subunit TAD2, putative
nr
ID XP_012083662.1
description PREDICTED: tRNA-specific adenosine deaminase 2-like isoform X1 [Jatropha curcas]
swissprot
ID Q5E9J7
description tRNA-specific adenosine deaminase 2 OS=Bos taurus GN=DEADC1 PE=2 SV=1
trembl
ID A0A067LPW9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07982 PE=4 SV=1
Gene Ontology
ID GO:0008270
description trna-specific adenosine deaminase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38625: 29858-33281
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003813_050 0.0 - - PREDICTED: tRNA-specific adenosine deaminase 2-like isoform X1 [Jatropha curcas]
2 Hb_000312_080 0.0832001999 - - PREDICTED: transmembrane protein 97-like [Jatropha curcas]
3 Hb_000181_050 0.0893154618 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
4 Hb_005725_270 0.0909593978 - - PREDICTED: uncharacterized protein LOC105630802 isoform X1 [Jatropha curcas]
5 Hb_002197_050 0.0910769817 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
6 Hb_002889_030 0.0927567161 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
7 Hb_001348_020 0.0934057028 - - PREDICTED: uncharacterized protein LOC105638926 isoform X2 [Jatropha curcas]
8 Hb_011628_060 0.1001260253 - - Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]
9 Hb_001215_040 0.1010604677 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000392_430 0.1028126801 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
11 Hb_000034_070 0.1039985638 - - PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like [Jatropha curcas]
12 Hb_172632_100 0.1044175809 - - PREDICTED: reticulon-like protein B22 [Jatropha curcas]
13 Hb_004109_310 0.1048553546 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
14 Hb_000228_110 0.1055714888 - - unnamed protein product [Vitis vinifera]
15 Hb_002078_200 0.1057125365 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
16 Hb_006913_010 0.1065606292 - - PREDICTED: uncharacterized protein LOC105649144 [Jatropha curcas]
17 Hb_031862_100 0.1075438133 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_028227_070 0.1105869654 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
19 Hb_007017_030 0.1107915783 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
20 Hb_023732_030 0.1111406012 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003813_050 Hb_003813_050 Hb_000312_080 Hb_000312_080 Hb_003813_050--Hb_000312_080 Hb_000181_050 Hb_000181_050 Hb_003813_050--Hb_000181_050 Hb_005725_270 Hb_005725_270 Hb_003813_050--Hb_005725_270 Hb_002197_050 Hb_002197_050 Hb_003813_050--Hb_002197_050 Hb_002889_030 Hb_002889_030 Hb_003813_050--Hb_002889_030 Hb_001348_020 Hb_001348_020 Hb_003813_050--Hb_001348_020 Hb_001215_040 Hb_001215_040 Hb_000312_080--Hb_001215_040 Hb_000431_170 Hb_000431_170 Hb_000312_080--Hb_000431_170 Hb_000312_080--Hb_002197_050 Hb_005914_170 Hb_005914_170 Hb_000312_080--Hb_005914_170 Hb_005588_060 Hb_005588_060 Hb_000312_080--Hb_005588_060 Hb_000181_050--Hb_002889_030 Hb_001085_240 Hb_001085_240 Hb_000181_050--Hb_001085_240 Hb_000034_070 Hb_000034_070 Hb_000181_050--Hb_000034_070 Hb_000096_160 Hb_000096_160 Hb_000181_050--Hb_000096_160 Hb_002675_140 Hb_002675_140 Hb_000181_050--Hb_002675_140 Hb_005725_270--Hb_002197_050 Hb_003780_030 Hb_003780_030 Hb_005725_270--Hb_003780_030 Hb_005054_350 Hb_005054_350 Hb_005725_270--Hb_005054_350 Hb_108350_010 Hb_108350_010 Hb_005725_270--Hb_108350_010 Hb_172632_100 Hb_172632_100 Hb_005725_270--Hb_172632_100 Hb_000137_090 Hb_000137_090 Hb_002197_050--Hb_000137_090 Hb_000948_160 Hb_000948_160 Hb_002197_050--Hb_000948_160 Hb_002197_050--Hb_000431_170 Hb_000003_320 Hb_000003_320 Hb_002197_050--Hb_000003_320 Hb_031340_050 Hb_031340_050 Hb_002197_050--Hb_031340_050 Hb_000504_070 Hb_000504_070 Hb_002889_030--Hb_000504_070 Hb_000228_110 Hb_000228_110 Hb_002889_030--Hb_000228_110 Hb_033501_010 Hb_033501_010 Hb_002889_030--Hb_033501_010 Hb_019053_030 Hb_019053_030 Hb_002889_030--Hb_019053_030 Hb_062537_010 Hb_062537_010 Hb_001348_020--Hb_062537_010 Hb_001348_020--Hb_000228_110 Hb_011628_060 Hb_011628_060 Hb_001348_020--Hb_011628_060 Hb_000111_320 Hb_000111_320 Hb_001348_020--Hb_000111_320 Hb_000392_430 Hb_000392_430 Hb_001348_020--Hb_000392_430 Hb_023001_040 Hb_023001_040 Hb_001348_020--Hb_023001_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37101 0.855018 1.28148 2.39359 1.67344 1.96808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.75863 2.76639 1.62969 3.64395 0.866424

CAGE analysis