Hb_000137_090

Information

Type -
Description -
Location Contig137: 93391-129136
Sequence    

Annotation

kegg
ID vvi:104878478
description HAUS augmin-like complex subunit 3
nr
ID XP_010647270.1
description PREDICTED: HAUS augmin-like complex subunit 3 [Vitis vinifera]
swissprot
ID Q8QZX2
description HAUS augmin-like complex subunit 3 OS=Mus musculus GN=Haus3 PE=2 SV=1
trembl
ID A0A067LDH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15118 PE=4 SV=1
Gene Ontology
ID GO:0005634
description haus augmin-like complex subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10262: 93513-102939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000137_090 0.0 - - PREDICTED: HAUS augmin-like complex subunit 3 [Vitis vinifera]
2 Hb_002197_050 0.0666656166 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
3 Hb_031340_050 0.0699997896 - - PREDICTED: tropinone reductase 1-like isoform X1 [Jatropha curcas]
4 Hb_001357_250 0.0752628452 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
5 Hb_000031_120 0.0776148153 - - PREDICTED: uncharacterized protein LOC105637488 [Jatropha curcas]
6 Hb_000139_290 0.0792994238 - - PREDICTED: peroxisomal adenine nucleotide carrier 1-like isoform X1 [Jatropha curcas]
7 Hb_001009_250 0.0813318873 - - PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
8 Hb_002044_150 0.0858726117 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
9 Hb_004410_030 0.0869359803 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000468_060 0.0881454595 - - ku P70 DNA helicase, putative [Ricinus communis]
11 Hb_000417_130 0.0890962476 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
12 Hb_000381_120 0.0912528965 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
13 Hb_001301_100 0.0921346582 - - transporter, putative [Ricinus communis]
14 Hb_002000_080 0.0937675655 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
15 Hb_005725_270 0.0941842644 - - PREDICTED: uncharacterized protein LOC105630802 isoform X1 [Jatropha curcas]
16 Hb_002169_040 0.0942708715 - - unknown [Populus trichocarpa]
17 Hb_033642_090 0.0948136099 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004254_090 0.0948394869 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
19 Hb_002631_030 0.0950463872 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002835_040 0.0957283092 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000137_090 Hb_000137_090 Hb_002197_050 Hb_002197_050 Hb_000137_090--Hb_002197_050 Hb_031340_050 Hb_031340_050 Hb_000137_090--Hb_031340_050 Hb_001357_250 Hb_001357_250 Hb_000137_090--Hb_001357_250 Hb_000031_120 Hb_000031_120 Hb_000137_090--Hb_000031_120 Hb_000139_290 Hb_000139_290 Hb_000137_090--Hb_000139_290 Hb_001009_250 Hb_001009_250 Hb_000137_090--Hb_001009_250 Hb_000948_160 Hb_000948_160 Hb_002197_050--Hb_000948_160 Hb_000431_170 Hb_000431_170 Hb_002197_050--Hb_000431_170 Hb_000003_320 Hb_000003_320 Hb_002197_050--Hb_000003_320 Hb_000312_080 Hb_000312_080 Hb_002197_050--Hb_000312_080 Hb_002197_050--Hb_031340_050 Hb_031340_050--Hb_001357_250 Hb_001579_220 Hb_001579_220 Hb_031340_050--Hb_001579_220 Hb_000252_170 Hb_000252_170 Hb_031340_050--Hb_000252_170 Hb_023732_030 Hb_023732_030 Hb_031340_050--Hb_023732_030 Hb_033642_090 Hb_033642_090 Hb_001357_250--Hb_033642_090 Hb_004410_030 Hb_004410_030 Hb_001357_250--Hb_004410_030 Hb_000417_130 Hb_000417_130 Hb_001357_250--Hb_000417_130 Hb_123915_040 Hb_123915_040 Hb_001357_250--Hb_123915_040 Hb_000907_110 Hb_000907_110 Hb_001357_250--Hb_000907_110 Hb_063716_100 Hb_063716_100 Hb_001357_250--Hb_063716_100 Hb_002000_080 Hb_002000_080 Hb_000031_120--Hb_002000_080 Hb_000031_120--Hb_000139_290 Hb_000031_120--Hb_001009_250 Hb_000031_120--Hb_031340_050 Hb_011671_180 Hb_011671_180 Hb_000031_120--Hb_011671_180 Hb_007017_090 Hb_007017_090 Hb_000139_290--Hb_007017_090 Hb_000139_290--Hb_001009_250 Hb_000139_290--Hb_004410_030 Hb_000139_290--Hb_001357_250 Hb_007390_010 Hb_007390_010 Hb_000139_290--Hb_007390_010 Hb_001009_250--Hb_007017_090 Hb_001009_250--Hb_001357_250 Hb_001009_250--Hb_004410_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.37924 1.29845 2.60655 1.91027 2.89082 3.05357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.13004 3.72479 3.2403 5.12885 2.32223

CAGE analysis