Hb_002675_140

Information

Type -
Description -
Location Contig2675: 129666-133061
Sequence    

Annotation

kegg
ID rcu:RCOM_0894780
description ring finger protein, putative
nr
ID XP_012073293.1
description PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
swissprot
ID Q93Z92
description E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1
trembl
ID A0A067KY42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06236 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase at1g63170

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27859: 129993-130291 , PASA_asmbl_27862: 133204-133344
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002675_140 0.0 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
2 Hb_000034_070 0.0828151105 - - PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like [Jatropha curcas]
3 Hb_001085_240 0.0859709069 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
4 Hb_001369_250 0.086024971 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
5 Hb_003633_050 0.0986991326 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
6 Hb_001104_100 0.1003961437 - - RecName: Full=Enolase 2; AltName: Full=2-phospho-D-glycerate hydro-lyase 2; AltName: Full=2-phosphoglycerate dehydratase 2; AltName: Allergen=Hev b 9 [Hevea brasiliensis]
7 Hb_000181_050 0.1007641227 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
8 Hb_000115_150 0.1021065853 - - PREDICTED: IST1 homolog [Jatropha curcas]
9 Hb_001104_230 0.1048421841 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
10 Hb_011794_080 0.1068009561 - - acyl-CoA thioesterase, putative [Ricinus communis]
11 Hb_000665_050 0.11006468 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
12 Hb_001476_060 0.1110108087 - - PREDICTED: uncharacterized protein At5g01610 [Jatropha curcas]
13 Hb_002631_080 0.1116512969 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
14 Hb_009787_030 0.113344718 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
15 Hb_004429_090 0.1143070699 - - PREDICTED: ras GTPase-activating protein-binding protein 1-like isoform X1 [Jatropha curcas]
16 Hb_002889_030 0.1161853711 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
17 Hb_073973_100 0.1166275735 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
18 Hb_000096_160 0.1168732248 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
19 Hb_000094_210 0.1169896266 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
20 Hb_001348_020 0.1176180279 - - PREDICTED: uncharacterized protein LOC105638926 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002675_140 Hb_002675_140 Hb_000034_070 Hb_000034_070 Hb_002675_140--Hb_000034_070 Hb_001085_240 Hb_001085_240 Hb_002675_140--Hb_001085_240 Hb_001369_250 Hb_001369_250 Hb_002675_140--Hb_001369_250 Hb_003633_050 Hb_003633_050 Hb_002675_140--Hb_003633_050 Hb_001104_100 Hb_001104_100 Hb_002675_140--Hb_001104_100 Hb_000181_050 Hb_000181_050 Hb_002675_140--Hb_000181_050 Hb_000331_180 Hb_000331_180 Hb_000034_070--Hb_000331_180 Hb_001348_020 Hb_001348_020 Hb_000034_070--Hb_001348_020 Hb_001366_370 Hb_001366_370 Hb_000034_070--Hb_001366_370 Hb_073973_100 Hb_073973_100 Hb_000034_070--Hb_073973_100 Hb_000034_070--Hb_000181_050 Hb_001085_240--Hb_003633_050 Hb_000096_160 Hb_000096_160 Hb_001085_240--Hb_000096_160 Hb_000094_210 Hb_000094_210 Hb_001085_240--Hb_000094_210 Hb_000228_110 Hb_000228_110 Hb_001085_240--Hb_000228_110 Hb_005914_170 Hb_005914_170 Hb_001085_240--Hb_005914_170 Hb_010174_150 Hb_010174_150 Hb_001369_250--Hb_010174_150 Hb_000555_100 Hb_000555_100 Hb_001369_250--Hb_000555_100 Hb_010560_050 Hb_010560_050 Hb_001369_250--Hb_010560_050 Hb_002357_060 Hb_002357_060 Hb_001369_250--Hb_002357_060 Hb_000665_050 Hb_000665_050 Hb_001369_250--Hb_000665_050 Hb_003633_050--Hb_000096_160 Hb_003633_050--Hb_005914_170 Hb_011344_190 Hb_011344_190 Hb_003633_050--Hb_011344_190 Hb_003376_250 Hb_003376_250 Hb_003633_050--Hb_003376_250 Hb_019654_030 Hb_019654_030 Hb_003633_050--Hb_019654_030 Hb_000115_150 Hb_000115_150 Hb_001104_100--Hb_000115_150 Hb_001104_100--Hb_001085_240 Hb_001104_230 Hb_001104_230 Hb_001104_100--Hb_001104_230 Hb_001104_100--Hb_000094_210 Hb_002093_060 Hb_002093_060 Hb_001104_100--Hb_002093_060 Hb_002889_030 Hb_002889_030 Hb_000181_050--Hb_002889_030 Hb_003813_050 Hb_003813_050 Hb_000181_050--Hb_003813_050 Hb_000181_050--Hb_001085_240 Hb_000181_050--Hb_000096_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.909936 0.774854 0.822112 2.56983 0.735461 1.13848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.33535 1.44747 1.19755 2.94909 0.927262

CAGE analysis