Hb_000181_050

Information

Type -
Description -
Location Contig181: 31003-44249
Sequence    

Annotation

kegg
ID rcu:RCOM_0108610
description 26S proteasome non-ATPase regulatory subunit, putative
nr
ID XP_012076321.1
description PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
swissprot
ID Q0P5A6
description 26S proteasome non-ATPase regulatory subunit 5 OS=Bos taurus GN=PSMD5 PE=2 SV=1
trembl
ID A0A067LF59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15307 PE=4 SV=1
Gene Ontology
ID GO:0005488
description 26s proteasome non-atpase regulatory

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17488: 31029-44538 , PASA_asmbl_17489: 35008-35393
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_050 0.0 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
2 Hb_002889_030 0.0796477879 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
3 Hb_003813_050 0.0893154618 - - PREDICTED: tRNA-specific adenosine deaminase 2-like isoform X1 [Jatropha curcas]
4 Hb_001085_240 0.0939952687 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
5 Hb_000034_070 0.0940771318 - - PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like [Jatropha curcas]
6 Hb_000096_160 0.1005628589 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
7 Hb_002675_140 0.1007641227 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
8 Hb_023732_030 0.1012295802 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
9 Hb_002000_080 0.1024983828 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
10 Hb_073973_100 0.1036371103 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
11 Hb_019053_030 0.1039600327 - - PREDICTED: sulfite oxidase [Jatropha curcas]
12 Hb_003633_050 0.1068080542 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
13 Hb_000103_270 0.1071129665 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
14 Hb_000504_070 0.110550071 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
15 Hb_000228_110 0.1105818515 - - unnamed protein product [Vitis vinifera]
16 Hb_000665_050 0.110677959 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
17 Hb_002197_050 0.1118249965 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
18 Hb_000903_060 0.1126820146 - - PREDICTED: ras-related protein RABA5e [Jatropha curcas]
19 Hb_002631_080 0.1127271203 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
20 Hb_033501_010 0.1132151166 - - hypothetical protein JCGZ_21381 [Jatropha curcas]

Gene co-expression network

sample Hb_000181_050 Hb_000181_050 Hb_002889_030 Hb_002889_030 Hb_000181_050--Hb_002889_030 Hb_003813_050 Hb_003813_050 Hb_000181_050--Hb_003813_050 Hb_001085_240 Hb_001085_240 Hb_000181_050--Hb_001085_240 Hb_000034_070 Hb_000034_070 Hb_000181_050--Hb_000034_070 Hb_000096_160 Hb_000096_160 Hb_000181_050--Hb_000096_160 Hb_002675_140 Hb_002675_140 Hb_000181_050--Hb_002675_140 Hb_000504_070 Hb_000504_070 Hb_002889_030--Hb_000504_070 Hb_000228_110 Hb_000228_110 Hb_002889_030--Hb_000228_110 Hb_002889_030--Hb_003813_050 Hb_033501_010 Hb_033501_010 Hb_002889_030--Hb_033501_010 Hb_019053_030 Hb_019053_030 Hb_002889_030--Hb_019053_030 Hb_000312_080 Hb_000312_080 Hb_003813_050--Hb_000312_080 Hb_005725_270 Hb_005725_270 Hb_003813_050--Hb_005725_270 Hb_002197_050 Hb_002197_050 Hb_003813_050--Hb_002197_050 Hb_001348_020 Hb_001348_020 Hb_003813_050--Hb_001348_020 Hb_003633_050 Hb_003633_050 Hb_001085_240--Hb_003633_050 Hb_001085_240--Hb_000096_160 Hb_000094_210 Hb_000094_210 Hb_001085_240--Hb_000094_210 Hb_001085_240--Hb_000228_110 Hb_001085_240--Hb_002675_140 Hb_005914_170 Hb_005914_170 Hb_001085_240--Hb_005914_170 Hb_000034_070--Hb_002675_140 Hb_000331_180 Hb_000331_180 Hb_000034_070--Hb_000331_180 Hb_000034_070--Hb_001348_020 Hb_001366_370 Hb_001366_370 Hb_000034_070--Hb_001366_370 Hb_073973_100 Hb_073973_100 Hb_000034_070--Hb_073973_100 Hb_000096_160--Hb_003633_050 Hb_000096_160--Hb_005914_170 Hb_000096_160--Hb_000228_110 Hb_001157_110 Hb_001157_110 Hb_000096_160--Hb_001157_110 Hb_000103_270 Hb_000103_270 Hb_000096_160--Hb_000103_270 Hb_001369_250 Hb_001369_250 Hb_002675_140--Hb_001369_250 Hb_002675_140--Hb_003633_050 Hb_001104_100 Hb_001104_100 Hb_002675_140--Hb_001104_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.29073 8.54599 10.8934 18.279 11.2861 17.6932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6345 18.3415 16.2582 35.2172 8.21432

CAGE analysis