Hb_019053_030

Information

Type -
Description -
Location Contig19053: 17942-29345
Sequence    

Annotation

kegg
ID rcu:RCOM_1677230
description sulfite reductase, putative (EC:1.8.3.1)
nr
ID XP_012070455.1
description PREDICTED: sulfite oxidase [Jatropha curcas]
swissprot
ID Q9S850
description Sulfite oxidase OS=Arabidopsis thaliana GN=SOX PE=1 SV=1
trembl
ID A0A067LCU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10126 PE=4 SV=1
Gene Ontology
ID GO:0005739
description sulfite oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18996: 15991-29221
cDNA
(Sanger)
(ID:Location)		 012_I21.ab1: 15991-24316 , 030_J13.ab1: 15991-24282 , 035_G01.ab1: 16004-23691

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019053_030 0.0 - - PREDICTED: sulfite oxidase [Jatropha curcas]
2 Hb_000228_110 0.0794104996 - - unnamed protein product [Vitis vinifera]
3 Hb_005147_030 0.0915823712 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
4 Hb_000031_120 0.094193561 - - PREDICTED: uncharacterized protein LOC105637488 [Jatropha curcas]
5 Hb_002889_030 0.0993376501 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
6 Hb_003747_020 0.1010453739 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [Jatropha curcas]
7 Hb_000181_050 0.1039600327 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
8 Hb_000096_160 0.1051511394 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
9 Hb_001348_020 0.1055332931 - - PREDICTED: uncharacterized protein LOC105638926 isoform X2 [Jatropha curcas]
10 Hb_002471_290 0.1064442853 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X1 [Jatropha curcas]
11 Hb_016522_010 0.1077654289 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
12 Hb_000137_090 0.1080662911 - - PREDICTED: HAUS augmin-like complex subunit 3 [Vitis vinifera]
13 Hb_007380_060 0.1082407619 - - hypothetical protein POPTR_0006s00280g [Populus trichocarpa]
14 Hb_002000_080 0.1089621868 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
15 Hb_002005_100 0.1092203158 - - -
16 Hb_011674_020 0.1093633142 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
17 Hb_001085_240 0.1097972153 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
18 Hb_000095_080 0.1106359094 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
19 Hb_000392_430 0.1120323559 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
20 Hb_002400_410 0.1123087231 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_019053_030 Hb_019053_030 Hb_000228_110 Hb_000228_110 Hb_019053_030--Hb_000228_110 Hb_005147_030 Hb_005147_030 Hb_019053_030--Hb_005147_030 Hb_000031_120 Hb_000031_120 Hb_019053_030--Hb_000031_120 Hb_002889_030 Hb_002889_030 Hb_019053_030--Hb_002889_030 Hb_003747_020 Hb_003747_020 Hb_019053_030--Hb_003747_020 Hb_000181_050 Hb_000181_050 Hb_019053_030--Hb_000181_050 Hb_001348_020 Hb_001348_020 Hb_000228_110--Hb_001348_020 Hb_000096_160 Hb_000096_160 Hb_000228_110--Hb_000096_160 Hb_001085_240 Hb_001085_240 Hb_000228_110--Hb_001085_240 Hb_000228_110--Hb_002889_030 Hb_003633_050 Hb_003633_050 Hb_000228_110--Hb_003633_050 Hb_002471_290 Hb_002471_290 Hb_005147_030--Hb_002471_290 Hb_001473_180 Hb_001473_180 Hb_005147_030--Hb_001473_180 Hb_002600_150 Hb_002600_150 Hb_005147_030--Hb_002600_150 Hb_009079_030 Hb_009079_030 Hb_005147_030--Hb_009079_030 Hb_000329_060 Hb_000329_060 Hb_005147_030--Hb_000329_060 Hb_002044_150 Hb_002044_150 Hb_005147_030--Hb_002044_150 Hb_000137_090 Hb_000137_090 Hb_000031_120--Hb_000137_090 Hb_002000_080 Hb_002000_080 Hb_000031_120--Hb_002000_080 Hb_000139_290 Hb_000139_290 Hb_000031_120--Hb_000139_290 Hb_001009_250 Hb_001009_250 Hb_000031_120--Hb_001009_250 Hb_031340_050 Hb_031340_050 Hb_000031_120--Hb_031340_050 Hb_011671_180 Hb_011671_180 Hb_000031_120--Hb_011671_180 Hb_002889_030--Hb_000181_050 Hb_000504_070 Hb_000504_070 Hb_002889_030--Hb_000504_070 Hb_003813_050 Hb_003813_050 Hb_002889_030--Hb_003813_050 Hb_033501_010 Hb_033501_010 Hb_002889_030--Hb_033501_010 Hb_003994_150 Hb_003994_150 Hb_003747_020--Hb_003994_150 Hb_000872_010 Hb_000872_010 Hb_003747_020--Hb_000872_010 Hb_003747_020--Hb_005147_030 Hb_001105_020 Hb_001105_020 Hb_003747_020--Hb_001105_020 Hb_002968_080 Hb_002968_080 Hb_003747_020--Hb_002968_080 Hb_000181_050--Hb_003813_050 Hb_000181_050--Hb_001085_240 Hb_000034_070 Hb_000034_070 Hb_000181_050--Hb_000034_070 Hb_000181_050--Hb_000096_160 Hb_002675_140 Hb_002675_140 Hb_000181_050--Hb_002675_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.93811 2.76317 4.38019 5.85944 4.44715 7.18655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.24382 6.83294 5.92679 15.9715 6.60737

CAGE analysis