Hb_001009_250

Information

Type -
Description -
Location Contig1009: 152414-155667
Sequence    

Annotation

kegg
ID rcu:RCOM_1507310
description nucleoside diphosphate kinase, putative (EC:2.7.4.6)
nr
ID XP_012079896.1
description PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
swissprot
ID Q01402
description Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1
trembl
ID A0A067K7F6
description Nucleoside diphosphate kinase OS=Jatropha curcas GN=JCGZ_11344 PE=3 SV=1
Gene Ontology
ID GO:0005634
description nucleoside diphosphate kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00537: 152583-155602
cDNA
(Sanger)
(ID:Location)		 007_M08.ab1: 152583-155446 , 016_F16.ab1: 152733-155464 , 034_B11.ab1: 152583-155455

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_250 0.0 - - PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
2 Hb_007017_090 0.0654337315 - - PREDICTED: coiled-coil domain-containing protein 186 [Jatropha curcas]
3 Hb_000139_290 0.0689019734 - - PREDICTED: peroxisomal adenine nucleotide carrier 1-like isoform X1 [Jatropha curcas]
4 Hb_000137_090 0.0813318873 - - PREDICTED: HAUS augmin-like complex subunit 3 [Vitis vinifera]
5 Hb_000031_120 0.0814576677 - - PREDICTED: uncharacterized protein LOC105637488 [Jatropha curcas]
6 Hb_001357_250 0.0861728124 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
7 Hb_004410_030 0.0877515075 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_063716_100 0.0908428469 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
9 Hb_029879_010 0.0933856452 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
10 Hb_031340_050 0.0976481232 - - PREDICTED: tropinone reductase 1-like isoform X1 [Jatropha curcas]
11 Hb_030736_100 0.1012418202 - - conserved hypothetical protein [Ricinus communis]
12 Hb_033642_090 0.1015426482 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001301_100 0.1016022032 - - transporter, putative [Ricinus communis]
14 Hb_007575_050 0.1018408034 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
15 Hb_000032_280 0.105406579 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
16 Hb_000417_130 0.106606863 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
17 Hb_002205_210 0.1070010509 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X2 [Jatropha curcas]
18 Hb_004954_070 0.1070770755 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
19 Hb_007632_240 0.1074650238 - - transporter, putative [Ricinus communis]
20 Hb_000039_220 0.1081703931 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]

Gene co-expression network

sample Hb_001009_250 Hb_001009_250 Hb_007017_090 Hb_007017_090 Hb_001009_250--Hb_007017_090 Hb_000139_290 Hb_000139_290 Hb_001009_250--Hb_000139_290 Hb_000137_090 Hb_000137_090 Hb_001009_250--Hb_000137_090 Hb_000031_120 Hb_000031_120 Hb_001009_250--Hb_000031_120 Hb_001357_250 Hb_001357_250 Hb_001009_250--Hb_001357_250 Hb_004410_030 Hb_004410_030 Hb_001009_250--Hb_004410_030 Hb_007017_090--Hb_000139_290 Hb_002205_210 Hb_002205_210 Hb_007017_090--Hb_002205_210 Hb_003226_140 Hb_003226_140 Hb_007017_090--Hb_003226_140 Hb_033642_090 Hb_033642_090 Hb_007017_090--Hb_033642_090 Hb_007017_090--Hb_001357_250 Hb_000139_290--Hb_004410_030 Hb_000139_290--Hb_001357_250 Hb_000139_290--Hb_000137_090 Hb_007390_010 Hb_007390_010 Hb_000139_290--Hb_007390_010 Hb_002197_050 Hb_002197_050 Hb_000137_090--Hb_002197_050 Hb_031340_050 Hb_031340_050 Hb_000137_090--Hb_031340_050 Hb_000137_090--Hb_001357_250 Hb_000137_090--Hb_000031_120 Hb_002000_080 Hb_002000_080 Hb_000031_120--Hb_002000_080 Hb_000031_120--Hb_000139_290 Hb_000031_120--Hb_031340_050 Hb_011671_180 Hb_011671_180 Hb_000031_120--Hb_011671_180 Hb_001357_250--Hb_033642_090 Hb_001357_250--Hb_004410_030 Hb_000417_130 Hb_000417_130 Hb_001357_250--Hb_000417_130 Hb_123915_040 Hb_123915_040 Hb_001357_250--Hb_123915_040 Hb_000907_110 Hb_000907_110 Hb_001357_250--Hb_000907_110 Hb_063716_100 Hb_063716_100 Hb_001357_250--Hb_063716_100 Hb_000011_200 Hb_000011_200 Hb_004410_030--Hb_000011_200 Hb_003025_110 Hb_003025_110 Hb_004410_030--Hb_003025_110 Hb_000225_040 Hb_000225_040 Hb_004410_030--Hb_000225_040 Hb_002271_030 Hb_002271_030 Hb_004410_030--Hb_002271_030 Hb_004619_030 Hb_004619_030 Hb_004410_030--Hb_004619_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.9298 12.4698 23.4868 9.83605 20.2372 32.749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.2577 26.0554 19.8856 37.0843 19.6056

CAGE analysis