Hb_007017_090

Information

Type -
Description -
Location Contig7017: 87708-93280
Sequence    

Annotation

kegg
ID pop:POPTR_0008s19490g
description POPTRDRAFT_766696; hypothetical protein
nr
ID XP_012092457.1
description PREDICTED: coiled-coil domain-containing protein 186 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9HLT8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s19490g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54893: 93174-93501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007017_090 0.0 - - PREDICTED: coiled-coil domain-containing protein 186 [Jatropha curcas]
2 Hb_001009_250 0.0654337315 - - PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
3 Hb_000139_290 0.0673486022 - - PREDICTED: peroxisomal adenine nucleotide carrier 1-like isoform X1 [Jatropha curcas]
4 Hb_002205_210 0.0929512207 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X2 [Jatropha curcas]
5 Hb_003226_140 0.0936450778 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
6 Hb_033642_090 0.0952997938 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001357_250 0.0960911675 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
8 Hb_003780_030 0.0976177014 - - PREDICTED: protein CMSS1 [Jatropha curcas]
9 Hb_000317_240 0.0978558992 - - PREDICTED: protein DYAD [Jatropha curcas]
10 Hb_001662_150 0.0988157425 - - Scaffold attachment factor B1 [Medicago truncatula]
11 Hb_001599_040 0.0989626869 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
12 Hb_007575_050 0.0995626802 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
13 Hb_002303_070 0.100287894 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
14 Hb_000031_120 0.1003526796 - - PREDICTED: uncharacterized protein LOC105637488 [Jatropha curcas]
15 Hb_063716_100 0.1015006067 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
16 Hb_004410_030 0.1015134926 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_005725_270 0.1018678035 - - PREDICTED: uncharacterized protein LOC105630802 isoform X1 [Jatropha curcas]
18 Hb_108350_010 0.1018903879 - - GTP-binding protein erg, putative [Ricinus communis]
19 Hb_001579_320 0.1019826248 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
20 Hb_000039_220 0.1029389785 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]

Gene co-expression network

sample Hb_007017_090 Hb_007017_090 Hb_001009_250 Hb_001009_250 Hb_007017_090--Hb_001009_250 Hb_000139_290 Hb_000139_290 Hb_007017_090--Hb_000139_290 Hb_002205_210 Hb_002205_210 Hb_007017_090--Hb_002205_210 Hb_003226_140 Hb_003226_140 Hb_007017_090--Hb_003226_140 Hb_033642_090 Hb_033642_090 Hb_007017_090--Hb_033642_090 Hb_001357_250 Hb_001357_250 Hb_007017_090--Hb_001357_250 Hb_001009_250--Hb_000139_290 Hb_000137_090 Hb_000137_090 Hb_001009_250--Hb_000137_090 Hb_000031_120 Hb_000031_120 Hb_001009_250--Hb_000031_120 Hb_001009_250--Hb_001357_250 Hb_004410_030 Hb_004410_030 Hb_001009_250--Hb_004410_030 Hb_000139_290--Hb_004410_030 Hb_000139_290--Hb_001357_250 Hb_000139_290--Hb_000137_090 Hb_007390_010 Hb_007390_010 Hb_000139_290--Hb_007390_010 Hb_001040_100 Hb_001040_100 Hb_002205_210--Hb_001040_100 Hb_168978_030 Hb_168978_030 Hb_002205_210--Hb_168978_030 Hb_063716_100 Hb_063716_100 Hb_002205_210--Hb_063716_100 Hb_000640_170 Hb_000640_170 Hb_002205_210--Hb_000640_170 Hb_001599_040 Hb_001599_040 Hb_002205_210--Hb_001599_040 Hb_000302_310 Hb_000302_310 Hb_002205_210--Hb_000302_310 Hb_002303_070 Hb_002303_070 Hb_003226_140--Hb_002303_070 Hb_000215_110 Hb_000215_110 Hb_003226_140--Hb_000215_110 Hb_002473_130 Hb_002473_130 Hb_003226_140--Hb_002473_130 Hb_000468_060 Hb_000468_060 Hb_003226_140--Hb_000468_060 Hb_003226_140--Hb_001599_040 Hb_005357_080 Hb_005357_080 Hb_003226_140--Hb_005357_080 Hb_033642_090--Hb_001357_250 Hb_000907_110 Hb_000907_110 Hb_033642_090--Hb_000907_110 Hb_002784_020 Hb_002784_020 Hb_033642_090--Hb_002784_020 Hb_006831_140 Hb_006831_140 Hb_033642_090--Hb_006831_140 Hb_123915_040 Hb_123915_040 Hb_033642_090--Hb_123915_040 Hb_000696_230 Hb_000696_230 Hb_033642_090--Hb_000696_230 Hb_001357_250--Hb_004410_030 Hb_000417_130 Hb_000417_130 Hb_001357_250--Hb_000417_130 Hb_001357_250--Hb_123915_040 Hb_001357_250--Hb_000907_110 Hb_001357_250--Hb_063716_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.250648 0.17622 0.283413 0.166869 0.285272 0.486488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.403887 0.450127 0.198474 0.44431 0.22095

CAGE analysis