Hb_000139_290

Information

Type -
Description -
Location Contig139: 332949-336159
Sequence    

Annotation

kegg
ID rcu:RCOM_0913760
description peroxisomal membrane protein pmp34, putative
nr
ID XP_012069566.1
description PREDICTED: peroxisomal adenine nucleotide carrier 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9MA90
description Peroxisomal adenine nucleotide carrier 1 OS=Arabidopsis thaliana GN=PNC1 PE=1 SV=1
trembl
ID A0A067KV97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02134 PE=3 SV=1
Gene Ontology
ID GO:0055085
description peroxisomal adenine nucleotide carrier 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10648: 333044-333183 , PASA_asmbl_10649: 333303-334698 , PASA_asmbl_10650: 335277-335995
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_290 0.0 - - PREDICTED: peroxisomal adenine nucleotide carrier 1-like isoform X1 [Jatropha curcas]
2 Hb_007017_090 0.0673486022 - - PREDICTED: coiled-coil domain-containing protein 186 [Jatropha curcas]
3 Hb_001009_250 0.0689019734 - - PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
4 Hb_004410_030 0.0738212342 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_001357_250 0.078702869 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
6 Hb_000137_090 0.0792994238 - - PREDICTED: HAUS augmin-like complex subunit 3 [Vitis vinifera]
7 Hb_007390_010 0.0805023389 - - catalytic, putative [Ricinus communis]
8 Hb_000031_120 0.0806549906 - - PREDICTED: uncharacterized protein LOC105637488 [Jatropha curcas]
9 Hb_108350_010 0.0848183381 - - GTP-binding protein erg, putative [Ricinus communis]
10 Hb_165928_030 0.0862216602 - - conserved hypothetical protein [Ricinus communis]
11 Hb_033642_090 0.0865565625 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002197_050 0.0869070935 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
13 Hb_001599_040 0.0874525659 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
14 Hb_003525_010 0.0879928323 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
15 Hb_000334_280 0.0886755365 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
16 Hb_000417_130 0.0899090657 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
17 Hb_029879_010 0.0903238887 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
18 Hb_063716_100 0.0912247608 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
19 Hb_003878_070 0.0921552853 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
20 Hb_002303_070 0.0924837357 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]

Gene co-expression network

sample Hb_000139_290 Hb_000139_290 Hb_007017_090 Hb_007017_090 Hb_000139_290--Hb_007017_090 Hb_001009_250 Hb_001009_250 Hb_000139_290--Hb_001009_250 Hb_004410_030 Hb_004410_030 Hb_000139_290--Hb_004410_030 Hb_001357_250 Hb_001357_250 Hb_000139_290--Hb_001357_250 Hb_000137_090 Hb_000137_090 Hb_000139_290--Hb_000137_090 Hb_007390_010 Hb_007390_010 Hb_000139_290--Hb_007390_010 Hb_007017_090--Hb_001009_250 Hb_002205_210 Hb_002205_210 Hb_007017_090--Hb_002205_210 Hb_003226_140 Hb_003226_140 Hb_007017_090--Hb_003226_140 Hb_033642_090 Hb_033642_090 Hb_007017_090--Hb_033642_090 Hb_007017_090--Hb_001357_250 Hb_001009_250--Hb_000137_090 Hb_000031_120 Hb_000031_120 Hb_001009_250--Hb_000031_120 Hb_001009_250--Hb_001357_250 Hb_001009_250--Hb_004410_030 Hb_004410_030--Hb_001357_250 Hb_000011_200 Hb_000011_200 Hb_004410_030--Hb_000011_200 Hb_003025_110 Hb_003025_110 Hb_004410_030--Hb_003025_110 Hb_000225_040 Hb_000225_040 Hb_004410_030--Hb_000225_040 Hb_002271_030 Hb_002271_030 Hb_004410_030--Hb_002271_030 Hb_004619_030 Hb_004619_030 Hb_004410_030--Hb_004619_030 Hb_001357_250--Hb_033642_090 Hb_000417_130 Hb_000417_130 Hb_001357_250--Hb_000417_130 Hb_123915_040 Hb_123915_040 Hb_001357_250--Hb_123915_040 Hb_000907_110 Hb_000907_110 Hb_001357_250--Hb_000907_110 Hb_063716_100 Hb_063716_100 Hb_001357_250--Hb_063716_100 Hb_002197_050 Hb_002197_050 Hb_000137_090--Hb_002197_050 Hb_031340_050 Hb_031340_050 Hb_000137_090--Hb_031340_050 Hb_000137_090--Hb_001357_250 Hb_000137_090--Hb_000031_120 Hb_001599_040 Hb_001599_040 Hb_007390_010--Hb_001599_040 Hb_001279_150 Hb_001279_150 Hb_007390_010--Hb_001279_150 Hb_004143_060 Hb_004143_060 Hb_007390_010--Hb_004143_060 Hb_000331_260 Hb_000331_260 Hb_007390_010--Hb_000331_260 Hb_008847_030 Hb_008847_030 Hb_007390_010--Hb_008847_030 Hb_001021_150 Hb_001021_150 Hb_007390_010--Hb_001021_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.59596 3.13481 4.62818 3.64636 5.0553 7.50692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.87523 8.44381 4.50694 9.0558 5.12098

CAGE analysis