Hb_002000_080

Information

Type -
Description -
Location Contig2000: 33996-41331
Sequence    

Annotation

kegg
ID tcc:TCM_035648
description Polypyrimidine tract-binding protein 3
nr
ID XP_012080720.1
description PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
swissprot
ID Q6ICX4
description Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1
trembl
ID A0A061FHH5
description Polypyrimidine tract-binding protein 3 OS=Theobroma cacao GN=TCM_035648 PE=4 SV=1
Gene Ontology
ID GO:0000166
description polypyrimidine tract-binding protein homolog 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20247: 34133-41246 , PASA_asmbl_20248: 34133-41246 , PASA_asmbl_20249: 36260-36551 , PASA_asmbl_20250: 39203-39543 , PASA_asmbl_20251: 37747-38125
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002000_080 0.0 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
2 Hb_165928_030 0.0635720513 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011671_180 0.0677234757 - - PREDICTED: probable quinone oxidoreductase [Jatropha curcas]
4 Hb_002481_080 0.0680675019 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
5 Hb_073973_100 0.0697045572 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
6 Hb_006907_130 0.0713359975 - - unnamed protein product [Coffea canephora]
7 Hb_003294_070 0.073630973 - - hypothetical protein RCOM_1714550 [Ricinus communis]
8 Hb_000015_040 0.0739269861 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
9 Hb_015934_070 0.0770080114 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
10 Hb_000031_120 0.0791184987 - - PREDICTED: uncharacterized protein LOC105637488 [Jatropha curcas]
11 Hb_001571_050 0.0799369462 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
12 Hb_001579_220 0.0804031635 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
13 Hb_031340_050 0.0841493497 - - PREDICTED: tropinone reductase 1-like isoform X1 [Jatropha curcas]
14 Hb_002400_410 0.085799986 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
15 Hb_011674_020 0.0861345486 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
16 Hb_000497_110 0.0874012159 - - PREDICTED: uncharacterized protein LOC105647268 [Jatropha curcas]
17 Hb_031862_100 0.0879582942 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_002197_050 0.0888367209 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
19 Hb_001314_050 0.0888643935 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
20 Hb_002044_150 0.0893218019 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002000_080 Hb_002000_080 Hb_165928_030 Hb_165928_030 Hb_002000_080--Hb_165928_030 Hb_011671_180 Hb_011671_180 Hb_002000_080--Hb_011671_180 Hb_002481_080 Hb_002481_080 Hb_002000_080--Hb_002481_080 Hb_073973_100 Hb_073973_100 Hb_002000_080--Hb_073973_100 Hb_006907_130 Hb_006907_130 Hb_002000_080--Hb_006907_130 Hb_003294_070 Hb_003294_070 Hb_002000_080--Hb_003294_070 Hb_165928_030--Hb_003294_070 Hb_008725_230 Hb_008725_230 Hb_165928_030--Hb_008725_230 Hb_165928_030--Hb_073973_100 Hb_001584_120 Hb_001584_120 Hb_165928_030--Hb_001584_120 Hb_002303_070 Hb_002303_070 Hb_165928_030--Hb_002303_070 Hb_000497_110 Hb_000497_110 Hb_011671_180--Hb_000497_110 Hb_001009_170 Hb_001009_170 Hb_011671_180--Hb_001009_170 Hb_004920_120 Hb_004920_120 Hb_011671_180--Hb_004920_120 Hb_000252_200 Hb_000252_200 Hb_011671_180--Hb_000252_200 Hb_000031_120 Hb_000031_120 Hb_011671_180--Hb_000031_120 Hb_028227_070 Hb_028227_070 Hb_002481_080--Hb_028227_070 Hb_000028_180 Hb_000028_180 Hb_002481_080--Hb_000028_180 Hb_011485_070 Hb_011485_070 Hb_002481_080--Hb_011485_070 Hb_001016_120 Hb_001016_120 Hb_002481_080--Hb_001016_120 Hb_000645_090 Hb_000645_090 Hb_002481_080--Hb_000645_090 Hb_003376_330 Hb_003376_330 Hb_073973_100--Hb_003376_330 Hb_000270_490 Hb_000270_490 Hb_073973_100--Hb_000270_490 Hb_000556_120 Hb_000556_120 Hb_073973_100--Hb_000556_120 Hb_023732_030 Hb_023732_030 Hb_073973_100--Hb_023732_030 Hb_015934_070 Hb_015934_070 Hb_006907_130--Hb_015934_070 Hb_031862_100 Hb_031862_100 Hb_006907_130--Hb_031862_100 Hb_001386_040 Hb_001386_040 Hb_006907_130--Hb_001386_040 Hb_002111_040 Hb_002111_040 Hb_006907_130--Hb_002111_040 Hb_001545_080 Hb_001545_080 Hb_006907_130--Hb_001545_080 Hb_000181_400 Hb_000181_400 Hb_003294_070--Hb_000181_400 Hb_009079_030 Hb_009079_030 Hb_003294_070--Hb_009079_030 Hb_004324_130 Hb_004324_130 Hb_003294_070--Hb_004324_130 Hb_000181_320 Hb_000181_320 Hb_003294_070--Hb_000181_320 Hb_000003_320 Hb_000003_320 Hb_003294_070--Hb_000003_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1615 12.4736 12.1821 18.7628 14.3401 25.646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.6955 23.8259 22.4624 33.8493 19.0655

CAGE analysis