Hb_002111_040

Information

Type -
Description -
Location Contig2111: 39906-44812
Sequence    

Annotation

kegg
ID rcu:RCOM_0934410
description hypothetical protein
nr
ID KDP30207.1
description hypothetical protein JCGZ_16989 [Jatropha curcas]
swissprot
ID Q8GWH3
description Protein OS-9 homolog OS=Arabidopsis thaliana GN=OS9 PE=1 SV=1
trembl
ID A0A067K292
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16989 PE=4 SV=1
Gene Ontology
ID GO:0005783
description protein os-9 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21890: 40062-44787 , PASA_asmbl_21891: 40972-41106
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002111_040 0.0 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
2 Hb_000291_080 0.0619482746 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
3 Hb_005305_110 0.0698440136 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
4 Hb_000028_350 0.0740214751 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
5 Hb_031862_100 0.0761140154 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_001390_130 0.0761151474 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
7 Hb_006420_100 0.079386015 - - PREDICTED: protein bicaudal C homolog 1 [Jatropha curcas]
8 Hb_000363_360 0.0799661346 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
9 Hb_002183_060 0.08057114 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
10 Hb_006907_130 0.0837158135 - - unnamed protein product [Coffea canephora]
11 Hb_015934_070 0.0854145976 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
12 Hb_003697_040 0.0867483874 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
13 Hb_000841_020 0.0875810371 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
14 Hb_000820_090 0.087585298 - - -
15 Hb_019654_030 0.0903841693 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
16 Hb_001006_020 0.0919727658 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
17 Hb_000982_080 0.0932342574 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
18 Hb_002284_230 0.09382806 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
19 Hb_000477_060 0.0946213143 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
20 Hb_001369_690 0.0953835449 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_002111_040 Hb_002111_040 Hb_000291_080 Hb_000291_080 Hb_002111_040--Hb_000291_080 Hb_005305_110 Hb_005305_110 Hb_002111_040--Hb_005305_110 Hb_000028_350 Hb_000028_350 Hb_002111_040--Hb_000028_350 Hb_031862_100 Hb_031862_100 Hb_002111_040--Hb_031862_100 Hb_001390_130 Hb_001390_130 Hb_002111_040--Hb_001390_130 Hb_006420_100 Hb_006420_100 Hb_002111_040--Hb_006420_100 Hb_000291_080--Hb_001390_130 Hb_000820_090 Hb_000820_090 Hb_000291_080--Hb_000820_090 Hb_003697_040 Hb_003697_040 Hb_000291_080--Hb_003697_040 Hb_004696_080 Hb_004696_080 Hb_000291_080--Hb_004696_080 Hb_000363_360 Hb_000363_360 Hb_000291_080--Hb_000363_360 Hb_005305_110--Hb_031862_100 Hb_006420_080 Hb_006420_080 Hb_005305_110--Hb_006420_080 Hb_005305_110--Hb_000291_080 Hb_000477_060 Hb_000477_060 Hb_005305_110--Hb_000477_060 Hb_005305_110--Hb_000363_360 Hb_000808_190 Hb_000808_190 Hb_000028_350--Hb_000808_190 Hb_002284_230 Hb_002284_230 Hb_000028_350--Hb_002284_230 Hb_000028_350--Hb_000363_360 Hb_000563_200 Hb_000563_200 Hb_000028_350--Hb_000563_200 Hb_004672_010 Hb_004672_010 Hb_000028_350--Hb_004672_010 Hb_001386_040 Hb_001386_040 Hb_031862_100--Hb_001386_040 Hb_015934_070 Hb_015934_070 Hb_031862_100--Hb_015934_070 Hb_001314_050 Hb_001314_050 Hb_031862_100--Hb_001314_050 Hb_001189_070 Hb_001189_070 Hb_031862_100--Hb_001189_070 Hb_006907_130 Hb_006907_130 Hb_031862_100--Hb_006907_130 Hb_005914_170 Hb_005914_170 Hb_031862_100--Hb_005914_170 Hb_001390_130--Hb_003697_040 Hb_005488_200 Hb_005488_200 Hb_001390_130--Hb_005488_200 Hb_007416_060 Hb_007416_060 Hb_001390_130--Hb_007416_060 Hb_000538_070 Hb_000538_070 Hb_001390_130--Hb_000538_070 Hb_000072_180 Hb_000072_180 Hb_006420_100--Hb_000072_180 Hb_000046_350 Hb_000046_350 Hb_006420_100--Hb_000046_350 Hb_002183_060 Hb_002183_060 Hb_006420_100--Hb_002183_060 Hb_001545_170 Hb_001545_170 Hb_006420_100--Hb_001545_170 Hb_000023_090 Hb_000023_090 Hb_006420_100--Hb_000023_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.812 15.9136 31.6286 72.078 50.2916 50.8755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
87.2872 104.542 92.3177 80.4454 56.7149

CAGE analysis