Hb_001390_130

Information

Type -
Description -
Location Contig1390: 124659-138027
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08590g
description POPTRDRAFT_1087444; hypothetical protein
nr
ID XP_002313203.1
description hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
swissprot
ID Q9ZQR4
description DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2
trembl
ID B9HN49
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s08590g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10700: 132587-132761
cDNA
(Sanger)
(ID:Location)		 036_O17.ab1: 137540-138361 , 045_B04.ab1: 137518-138361

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001390_130 0.0 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
2 Hb_000291_080 0.060965013 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
3 Hb_002111_040 0.0761151474 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
4 Hb_003697_040 0.079369249 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
5 Hb_005488_200 0.0809977362 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
6 Hb_007416_060 0.0826129025 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
7 Hb_000538_070 0.0853538803 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
8 Hb_024128_020 0.0854171504 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
9 Hb_119600_070 0.0868463836 - - PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
10 Hb_000477_060 0.0901223492 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
11 Hb_019654_030 0.0903550931 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
12 Hb_002284_230 0.0904927911 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
13 Hb_006162_010 0.0921797836 - - CAZy families GH95 protein, partial [uncultured Chitinophaga sp.]
14 Hb_003697_050 0.0929857982 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
15 Hb_001234_100 0.0931563672 - - PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]
16 Hb_000820_090 0.0934084334 - - -
17 Hb_034380_020 0.0934166128 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]
18 Hb_094836_010 0.0936950898 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
19 Hb_005305_110 0.0937013626 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
20 Hb_000749_220 0.095362519 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001390_130 Hb_001390_130 Hb_000291_080 Hb_000291_080 Hb_001390_130--Hb_000291_080 Hb_002111_040 Hb_002111_040 Hb_001390_130--Hb_002111_040 Hb_003697_040 Hb_003697_040 Hb_001390_130--Hb_003697_040 Hb_005488_200 Hb_005488_200 Hb_001390_130--Hb_005488_200 Hb_007416_060 Hb_007416_060 Hb_001390_130--Hb_007416_060 Hb_000538_070 Hb_000538_070 Hb_001390_130--Hb_000538_070 Hb_000291_080--Hb_002111_040 Hb_000820_090 Hb_000820_090 Hb_000291_080--Hb_000820_090 Hb_000291_080--Hb_003697_040 Hb_004696_080 Hb_004696_080 Hb_000291_080--Hb_004696_080 Hb_000363_360 Hb_000363_360 Hb_000291_080--Hb_000363_360 Hb_005305_110 Hb_005305_110 Hb_002111_040--Hb_005305_110 Hb_000028_350 Hb_000028_350 Hb_002111_040--Hb_000028_350 Hb_031862_100 Hb_031862_100 Hb_002111_040--Hb_031862_100 Hb_006420_100 Hb_006420_100 Hb_002111_040--Hb_006420_100 Hb_000477_060 Hb_000477_060 Hb_003697_040--Hb_000477_060 Hb_003605_090 Hb_003605_090 Hb_003697_040--Hb_003605_090 Hb_003053_020 Hb_003053_020 Hb_003697_040--Hb_003053_020 Hb_004934_100 Hb_004934_100 Hb_003697_040--Hb_004934_100 Hb_004889_010 Hb_004889_010 Hb_003697_040--Hb_004889_010 Hb_000783_020 Hb_000783_020 Hb_003697_040--Hb_000783_020 Hb_000982_080 Hb_000982_080 Hb_005488_200--Hb_000982_080 Hb_005488_200--Hb_007416_060 Hb_003376_250 Hb_003376_250 Hb_005488_200--Hb_003376_250 Hb_148113_010 Hb_148113_010 Hb_005488_200--Hb_148113_010 Hb_000603_080 Hb_000603_080 Hb_005488_200--Hb_000603_080 Hb_005488_200--Hb_003697_040 Hb_000116_260 Hb_000116_260 Hb_007416_060--Hb_000116_260 Hb_007416_060--Hb_000783_020 Hb_001489_080 Hb_001489_080 Hb_007416_060--Hb_001489_080 Hb_007416_060--Hb_003376_250 Hb_000436_130 Hb_000436_130 Hb_007416_060--Hb_000436_130 Hb_000096_010 Hb_000096_010 Hb_000538_070--Hb_000096_010 Hb_119600_070 Hb_119600_070 Hb_000538_070--Hb_119600_070 Hb_000538_070--Hb_000291_080 Hb_009339_030 Hb_009339_030 Hb_000538_070--Hb_009339_030 Hb_003540_030 Hb_003540_030 Hb_000538_070--Hb_003540_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.41283 5.02013 9.66899 22.2496 12.4009 16.5538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8928 24.8975 30.9864 17.079 16.0157

CAGE analysis