Hb_000820_090

Information

Type -
Description -
Location Contig820: 93649-104906
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59562: 93750-104766 , PASA_asmbl_59564: 99571-99757
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000820_090 0.0 - - -
2 Hb_000291_080 0.0680805694 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
3 Hb_005488_200 0.0779037761 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
4 Hb_008232_010 0.079454982 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
5 Hb_000982_080 0.0803955 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
6 Hb_002111_040 0.087585298 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
7 Hb_004672_010 0.0899220446 - - ecotropic viral integration site, putative [Ricinus communis]
8 Hb_011344_190 0.0912096072 - - PREDICTED: maspardin [Jatropha curcas]
9 Hb_001123_160 0.0913606773 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_003622_040 0.0916144268 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
11 Hb_001390_130 0.0934084334 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
12 Hb_148113_010 0.0948302582 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like isoform X3 [Citrus sinensis]
13 Hb_019654_030 0.0966083949 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
14 Hb_032208_060 0.0967332047 - - PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
15 Hb_003376_250 0.0999029042 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
16 Hb_017131_010 0.1011226914 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
17 Hb_009193_030 0.1016468072 - - hypothetical protein POPTR_0010s16620g [Populus trichocarpa]
18 Hb_000538_070 0.1026725064 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
19 Hb_000934_190 0.1037077585 - - SER/ARG-rich protein 34A [Theobroma cacao]
20 Hb_002014_020 0.104009359 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000820_090 Hb_000820_090 Hb_000291_080 Hb_000291_080 Hb_000820_090--Hb_000291_080 Hb_005488_200 Hb_005488_200 Hb_000820_090--Hb_005488_200 Hb_008232_010 Hb_008232_010 Hb_000820_090--Hb_008232_010 Hb_000982_080 Hb_000982_080 Hb_000820_090--Hb_000982_080 Hb_002111_040 Hb_002111_040 Hb_000820_090--Hb_002111_040 Hb_004672_010 Hb_004672_010 Hb_000820_090--Hb_004672_010 Hb_001390_130 Hb_001390_130 Hb_000291_080--Hb_001390_130 Hb_000291_080--Hb_002111_040 Hb_003697_040 Hb_003697_040 Hb_000291_080--Hb_003697_040 Hb_004696_080 Hb_004696_080 Hb_000291_080--Hb_004696_080 Hb_000363_360 Hb_000363_360 Hb_000291_080--Hb_000363_360 Hb_005488_200--Hb_000982_080 Hb_007416_060 Hb_007416_060 Hb_005488_200--Hb_007416_060 Hb_003376_250 Hb_003376_250 Hb_005488_200--Hb_003376_250 Hb_148113_010 Hb_148113_010 Hb_005488_200--Hb_148113_010 Hb_000603_080 Hb_000603_080 Hb_005488_200--Hb_000603_080 Hb_005488_200--Hb_003697_040 Hb_008232_010--Hb_000982_080 Hb_001123_160 Hb_001123_160 Hb_008232_010--Hb_001123_160 Hb_011344_190 Hb_011344_190 Hb_008232_010--Hb_011344_190 Hb_008232_010--Hb_004672_010 Hb_003622_040 Hb_003622_040 Hb_008232_010--Hb_003622_040 Hb_015183_060 Hb_015183_060 Hb_008232_010--Hb_015183_060 Hb_000982_080--Hb_003376_250 Hb_000982_080--Hb_011344_190 Hb_001195_200 Hb_001195_200 Hb_000982_080--Hb_001195_200 Hb_006420_080 Hb_006420_080 Hb_000982_080--Hb_006420_080 Hb_005305_110 Hb_005305_110 Hb_002111_040--Hb_005305_110 Hb_000028_350 Hb_000028_350 Hb_002111_040--Hb_000028_350 Hb_031862_100 Hb_031862_100 Hb_002111_040--Hb_031862_100 Hb_002111_040--Hb_001390_130 Hb_006420_100 Hb_006420_100 Hb_002111_040--Hb_006420_100 Hb_005137_060 Hb_005137_060 Hb_004672_010--Hb_005137_060 Hb_000417_260 Hb_000417_260 Hb_004672_010--Hb_000417_260 Hb_000046_350 Hb_000046_350 Hb_004672_010--Hb_000046_350 Hb_000072_180 Hb_000072_180 Hb_004672_010--Hb_000072_180 Hb_027654_050 Hb_027654_050 Hb_004672_010--Hb_027654_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.4155 5.14983 8.80638 19.1145 8.85026 8.56821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9651 25.9458 28.0083 21.6719 10.7481

CAGE analysis