Hb_005137_060

Information

Type -
Description -
Location Contig5137: 73092-73641
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005137_060 0.0 - - -
2 Hb_004672_010 0.0682926414 - - ecotropic viral integration site, putative [Ricinus communis]
3 Hb_003462_120 0.0798929698 - - Acidic endochitinase [Theobroma cacao]
4 Hb_001005_080 0.0820507807 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
5 Hb_001481_140 0.0902799118 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
6 Hb_001222_080 0.0966464874 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
7 Hb_000922_040 0.1006127529 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
8 Hb_000417_260 0.101467525 - - protein with unknown function [Ricinus communis]
9 Hb_000046_350 0.1026065598 - - conserved hypothetical protein [Ricinus communis]
10 Hb_104265_040 0.1096126585 - - conserved hypothetical protein [Ricinus communis]
11 Hb_033642_080 0.1101056954 - - V-type proton ATPase subunit E [Hevea brasiliensis]
12 Hb_004837_160 0.1107179038 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
13 Hb_000072_180 0.1126039285 - - PREDICTED: EVI5-like protein [Jatropha curcas]
14 Hb_003291_020 0.1126930951 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
15 Hb_005568_120 0.1129291196 - - Prephenate dehydratase [Hevea brasiliensis]
16 Hb_001054_100 0.1130911311 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
17 Hb_003098_020 0.1140286246 - - 40S ribosomal protein S5B [Hevea brasiliensis]
18 Hb_005656_100 0.11449335 - - conserved hypothetical protein [Ricinus communis]
19 Hb_032208_060 0.1145821245 - - PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
20 Hb_001519_030 0.1147850556 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005137_060 Hb_005137_060 Hb_004672_010 Hb_004672_010 Hb_005137_060--Hb_004672_010 Hb_003462_120 Hb_003462_120 Hb_005137_060--Hb_003462_120 Hb_001005_080 Hb_001005_080 Hb_005137_060--Hb_001005_080 Hb_001481_140 Hb_001481_140 Hb_005137_060--Hb_001481_140 Hb_001222_080 Hb_001222_080 Hb_005137_060--Hb_001222_080 Hb_000922_040 Hb_000922_040 Hb_005137_060--Hb_000922_040 Hb_000417_260 Hb_000417_260 Hb_004672_010--Hb_000417_260 Hb_000046_350 Hb_000046_350 Hb_004672_010--Hb_000046_350 Hb_008232_010 Hb_008232_010 Hb_004672_010--Hb_008232_010 Hb_000072_180 Hb_000072_180 Hb_004672_010--Hb_000072_180 Hb_027654_050 Hb_027654_050 Hb_004672_010--Hb_027654_050 Hb_003462_120--Hb_001481_140 Hb_003462_120--Hb_004672_010 Hb_000175_030 Hb_000175_030 Hb_003462_120--Hb_000175_030 Hb_000934_190 Hb_000934_190 Hb_003462_120--Hb_000934_190 Hb_003783_030 Hb_003783_030 Hb_003462_120--Hb_003783_030 Hb_001005_080--Hb_000417_260 Hb_001005_080--Hb_001481_140 Hb_001519_030 Hb_001519_030 Hb_001005_080--Hb_001519_030 Hb_007192_100 Hb_007192_100 Hb_001005_080--Hb_007192_100 Hb_152910_020 Hb_152910_020 Hb_001005_080--Hb_152910_020 Hb_005463_140 Hb_005463_140 Hb_001005_080--Hb_005463_140 Hb_001481_140--Hb_001519_030 Hb_001481_140--Hb_000417_260 Hb_001481_140--Hb_004672_010 Hb_001008_090 Hb_001008_090 Hb_001481_140--Hb_001008_090 Hb_011344_190 Hb_011344_190 Hb_001222_080--Hb_011344_190 Hb_001222_080--Hb_000922_040 Hb_001222_080--Hb_000046_350 Hb_004837_160 Hb_004837_160 Hb_001222_080--Hb_004837_160 Hb_089032_030 Hb_089032_030 Hb_001222_080--Hb_089032_030 Hb_001222_080--Hb_008232_010 Hb_005269_080 Hb_005269_080 Hb_000922_040--Hb_005269_080 Hb_000384_120 Hb_000384_120 Hb_000922_040--Hb_000384_120 Hb_002016_080 Hb_002016_080 Hb_000922_040--Hb_002016_080 Hb_000701_100 Hb_000701_100 Hb_000922_040--Hb_000701_100 Hb_001410_060 Hb_001410_060 Hb_000922_040--Hb_001410_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.896674 1.91705 1.33854 3.93817 1.26297 2.32345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.35867 6.6607 5.82775 4.45301 1.94905

CAGE analysis