Hb_001410_060

Information

Type -
Description -
Location Contig1410: 98779-109576
Sequence    

Annotation

kegg
ID rcu:RCOM_1312190
description 26S proteasome non-atpase regulatory subunit, putative
nr
ID XP_012078432.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
swissprot
ID Q9SGW3
description 26S proteasome non-ATPase regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPN12A PE=1 SV=1
trembl
ID A0A067LFI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03117 PE=4 SV=1
Gene Ontology
ID GO:0005838
description 26s proteasome non-atpase regulatory subunit 8 homolog a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11107: 105572-109561
cDNA
(Sanger)
(ID:Location)		 050_N11r.ab1: 110061-112024 , 053_E09r.ab1: 110020-112024

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001410_060 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
2 Hb_000377_120 0.0706336002 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
3 Hb_000563_200 0.0752599467 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
4 Hb_000922_040 0.0850332406 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
5 Hb_003880_040 0.0853623511 - - hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
6 Hb_005306_070 0.0857566657 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
7 Hb_005269_080 0.0877935791 - - protein with unknown function [Ricinus communis]
8 Hb_000009_290 0.0898067095 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
9 Hb_148209_010 0.0932800421 - - RAS-related GTP-binding family protein [Populus trichocarpa]
10 Hb_145880_020 0.0947229847 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
11 Hb_000077_180 0.0950923517 - - -
12 Hb_000739_140 0.0965395131 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
13 Hb_186982_040 0.096759367 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
14 Hb_002303_060 0.0975536434 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001123_160 0.0976713509 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
16 Hb_000136_350 0.104529107 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
17 Hb_003291_020 0.1053038186 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
18 Hb_002876_020 0.1066692171 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
19 Hb_003106_100 0.1072605487 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
20 Hb_000384_120 0.1074511076 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001410_060 Hb_001410_060 Hb_000377_120 Hb_000377_120 Hb_001410_060--Hb_000377_120 Hb_000563_200 Hb_000563_200 Hb_001410_060--Hb_000563_200 Hb_000922_040 Hb_000922_040 Hb_001410_060--Hb_000922_040 Hb_003880_040 Hb_003880_040 Hb_001410_060--Hb_003880_040 Hb_005306_070 Hb_005306_070 Hb_001410_060--Hb_005306_070 Hb_005269_080 Hb_005269_080 Hb_001410_060--Hb_005269_080 Hb_000136_350 Hb_000136_350 Hb_000377_120--Hb_000136_350 Hb_000077_180 Hb_000077_180 Hb_000377_120--Hb_000077_180 Hb_000116_040 Hb_000116_040 Hb_000377_120--Hb_000116_040 Hb_000377_120--Hb_000922_040 Hb_186982_040 Hb_186982_040 Hb_000377_120--Hb_186982_040 Hb_145880_020 Hb_145880_020 Hb_000563_200--Hb_145880_020 Hb_001353_010 Hb_001353_010 Hb_000563_200--Hb_001353_010 Hb_148209_010 Hb_148209_010 Hb_000563_200--Hb_148209_010 Hb_001123_160 Hb_001123_160 Hb_000563_200--Hb_001123_160 Hb_000563_200--Hb_003880_040 Hb_000922_040--Hb_005269_080 Hb_000384_120 Hb_000384_120 Hb_000922_040--Hb_000384_120 Hb_001222_080 Hb_001222_080 Hb_000922_040--Hb_001222_080 Hb_002016_080 Hb_002016_080 Hb_000922_040--Hb_002016_080 Hb_000701_100 Hb_000701_100 Hb_000922_040--Hb_000701_100 Hb_000016_170 Hb_000016_170 Hb_003880_040--Hb_000016_170 Hb_000574_130 Hb_000574_130 Hb_003880_040--Hb_000574_130 Hb_003291_020 Hb_003291_020 Hb_003880_040--Hb_003291_020 Hb_005307_050 Hb_005307_050 Hb_003880_040--Hb_005307_050 Hb_000215_330 Hb_000215_330 Hb_005306_070--Hb_000215_330 Hb_000739_140 Hb_000739_140 Hb_005306_070--Hb_000739_140 Hb_000107_300 Hb_000107_300 Hb_005306_070--Hb_000107_300 Hb_003494_050 Hb_003494_050 Hb_005306_070--Hb_003494_050 Hb_005306_070--Hb_005269_080 Hb_002303_060 Hb_002303_060 Hb_005269_080--Hb_002303_060 Hb_000254_050 Hb_000254_050 Hb_005269_080--Hb_000254_050 Hb_005269_080--Hb_000384_120 Hb_001053_140 Hb_001053_140 Hb_005269_080--Hb_001053_140 Hb_005269_080--Hb_000701_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8178 14.6432 22.9623 70.4711 10.0646 20.3591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.6295 95.26 41.1189 42.1757 27.4014

CAGE analysis