Hb_000016_170

Information

Type -
Description -
Location Contig16: 199285-199752
Sequence    

Annotation

kegg
ID rcu:RCOM_1497610
description hypothetical protein
nr
ID XP_002510852.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P72983
description Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1509 PE=3 SV=1
trembl
ID B9R9H7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1497610 PE=4 SV=1
Gene Ontology
ID GO:0009507
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14284: 198849-199231 , PASA_asmbl_14285: 198672-199732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005167_030 0.0696588285 - - PREDICTED: serine/threonine-protein kinase At5g01020-like, partial [Camelina sativa]
3 Hb_003880_040 0.099698045 - - hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
4 Hb_005496_090 0.1050060579 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
5 Hb_008642_030 0.1094586243 - - PREDICTED: UMP-CMP kinase 3 isoform X1 [Jatropha curcas]
6 Hb_002154_110 0.1121931503 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
7 Hb_000946_100 0.11521531 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
8 Hb_000077_200 0.1159168951 - - PREDICTED: thioredoxin [Jatropha curcas]
9 Hb_000574_130 0.1195209991 - - calcineurin-like protein [Hevea brasiliensis]
10 Hb_000563_200 0.1196478154 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
11 Hb_145880_020 0.1279552369 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
12 Hb_002631_260 0.1323723958 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
13 Hb_001410_060 0.1358139842 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
14 Hb_024758_010 0.1373371791 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
15 Hb_130719_010 0.1374209235 - - V-type proton ATPase subunit E [Hevea brasiliensis]
16 Hb_000056_250 0.1375612024 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
17 Hb_000260_790 0.1387911106 - - NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1 [Theobroma cacao]
18 Hb_000049_050 0.1394258025 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
19 Hb_148209_010 0.1397978119 - - RAS-related GTP-binding family protein [Populus trichocarpa]
20 Hb_077399_010 0.1407023374 - - hypothetical protein POPTR_0003s09910g [Populus trichocarpa]

Gene co-expression network

sample Hb_000016_170 Hb_000016_170 Hb_005167_030 Hb_005167_030 Hb_000016_170--Hb_005167_030 Hb_003880_040 Hb_003880_040 Hb_000016_170--Hb_003880_040 Hb_005496_090 Hb_005496_090 Hb_000016_170--Hb_005496_090 Hb_008642_030 Hb_008642_030 Hb_000016_170--Hb_008642_030 Hb_002154_110 Hb_002154_110 Hb_000016_170--Hb_002154_110 Hb_000946_100 Hb_000946_100 Hb_000016_170--Hb_000946_100 Hb_005167_030--Hb_008642_030 Hb_005167_030--Hb_005496_090 Hb_005167_030--Hb_002154_110 Hb_027751_060 Hb_027751_060 Hb_005167_030--Hb_027751_060 Hb_000292_060 Hb_000292_060 Hb_005167_030--Hb_000292_060 Hb_001410_060 Hb_001410_060 Hb_003880_040--Hb_001410_060 Hb_000563_200 Hb_000563_200 Hb_003880_040--Hb_000563_200 Hb_000574_130 Hb_000574_130 Hb_003880_040--Hb_000574_130 Hb_003291_020 Hb_003291_020 Hb_003880_040--Hb_003291_020 Hb_005307_050 Hb_005307_050 Hb_003880_040--Hb_005307_050 Hb_130719_010 Hb_130719_010 Hb_005496_090--Hb_130719_010 Hb_000056_250 Hb_000056_250 Hb_005496_090--Hb_000056_250 Hb_138585_040 Hb_138585_040 Hb_005496_090--Hb_138585_040 Hb_083380_010 Hb_083380_010 Hb_005496_090--Hb_083380_010 Hb_005496_090--Hb_003291_020 Hb_008642_030--Hb_002154_110 Hb_158163_010 Hb_158163_010 Hb_008642_030--Hb_158163_010 Hb_003103_010 Hb_003103_010 Hb_008642_030--Hb_003103_010 Hb_008642_030--Hb_000563_200 Hb_002154_110--Hb_003103_010 Hb_002154_110--Hb_000563_200 Hb_006573_290 Hb_006573_290 Hb_002154_110--Hb_006573_290 Hb_145880_020 Hb_145880_020 Hb_002154_110--Hb_145880_020 Hb_000946_100--Hb_006573_290 Hb_002876_020 Hb_002876_020 Hb_000946_100--Hb_002876_020 Hb_000946_100--Hb_002154_110 Hb_002677_020 Hb_002677_020 Hb_000946_100--Hb_002677_020 Hb_000946_100--Hb_005496_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.72362 3.47498 4.27817 28.9833 2.62328 10.0706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3956 30.5081 22.8158 12.6708 17.1258

CAGE analysis