Hb_027751_060

Information

Type -
Description -
Location Contig27751: 61819-70668
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05350g
description POPTRDRAFT_823292; NADH2 dehydrogenase family protein
nr
ID XP_012093003.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Jatropha curcas]
swissprot
ID Q94C12
description NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Arabidopsis thaliana GN=At3g18410 PE=2 SV=1
trembl
ID A9PC01
description NADH2 dehydrogenase family protein OS=Populus trichocarpa GN=POPTR_0012s05350g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28982: 61809-70620 , PASA_asmbl_28983: 61809-67612
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027751_060 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Jatropha curcas]
2 Hb_000056_250 0.0907172472 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
3 Hb_000096_150 0.1134993489 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
4 Hb_000046_350 0.1158506385 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005167_030 0.1208251742 - - PREDICTED: serine/threonine-protein kinase At5g01020-like, partial [Camelina sativa]
6 Hb_000417_260 0.1240379278 - - protein with unknown function [Ricinus communis]
7 Hb_001284_030 0.1244186868 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
8 Hb_003117_010 0.1245871714 - - PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera]
9 Hb_003291_020 0.1258438491 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
10 Hb_005278_040 0.1265751602 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
11 Hb_000685_050 0.1268152063 - - PREDICTED: mitochondrial inner membrane protein OXA1-like [Populus euphratica]
12 Hb_000072_180 0.1276823088 - - PREDICTED: EVI5-like protein [Jatropha curcas]
13 Hb_001008_090 0.129069335 - - cytochrome C oxidase, putative [Ricinus communis]
14 Hb_130719_010 0.1300661454 - - V-type proton ATPase subunit E [Hevea brasiliensis]
15 Hb_004672_010 0.1301608041 - - ecotropic viral integration site, putative [Ricinus communis]
16 Hb_001484_010 0.1302619057 - - hypothetical protein POPTR_0005s07440g [Populus trichocarpa]
17 Hb_000635_210 0.1316151575 - - unknown [Populus trichocarpa]
18 Hb_012490_050 0.1341735275 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
19 Hb_019113_020 0.1354233011 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
20 Hb_000705_290 0.1355888841 - - C-4 methyl sterol oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_027751_060 Hb_027751_060 Hb_000056_250 Hb_000056_250 Hb_027751_060--Hb_000056_250 Hb_000096_150 Hb_000096_150 Hb_027751_060--Hb_000096_150 Hb_000046_350 Hb_000046_350 Hb_027751_060--Hb_000046_350 Hb_005167_030 Hb_005167_030 Hb_027751_060--Hb_005167_030 Hb_000417_260 Hb_000417_260 Hb_027751_060--Hb_000417_260 Hb_001284_030 Hb_001284_030 Hb_027751_060--Hb_001284_030 Hb_000056_250--Hb_000096_150 Hb_003291_020 Hb_003291_020 Hb_000056_250--Hb_003291_020 Hb_005278_040 Hb_005278_040 Hb_000056_250--Hb_005278_040 Hb_000056_250--Hb_000417_260 Hb_130719_010 Hb_130719_010 Hb_000056_250--Hb_130719_010 Hb_000125_210 Hb_000125_210 Hb_000096_150--Hb_000125_210 Hb_000928_130 Hb_000928_130 Hb_000096_150--Hb_000928_130 Hb_000318_160 Hb_000318_160 Hb_000096_150--Hb_000318_160 Hb_000673_020 Hb_000673_020 Hb_000096_150--Hb_000673_020 Hb_002026_120 Hb_002026_120 Hb_000096_150--Hb_002026_120 Hb_000072_180 Hb_000072_180 Hb_000046_350--Hb_000072_180 Hb_004672_010 Hb_004672_010 Hb_000046_350--Hb_004672_010 Hb_001222_080 Hb_001222_080 Hb_000046_350--Hb_001222_080 Hb_000046_350--Hb_001284_030 Hb_148113_010 Hb_148113_010 Hb_000046_350--Hb_148113_010 Hb_006420_100 Hb_006420_100 Hb_000046_350--Hb_006420_100 Hb_000016_170 Hb_000016_170 Hb_005167_030--Hb_000016_170 Hb_008642_030 Hb_008642_030 Hb_005167_030--Hb_008642_030 Hb_005496_090 Hb_005496_090 Hb_005167_030--Hb_005496_090 Hb_002154_110 Hb_002154_110 Hb_005167_030--Hb_002154_110 Hb_000292_060 Hb_000292_060 Hb_005167_030--Hb_000292_060 Hb_000417_260--Hb_005278_040 Hb_001005_080 Hb_001005_080 Hb_000417_260--Hb_001005_080 Hb_000384_120 Hb_000384_120 Hb_000417_260--Hb_000384_120 Hb_000417_260--Hb_004672_010 Hb_001008_090 Hb_001008_090 Hb_000417_260--Hb_001008_090 Hb_001481_140 Hb_001481_140 Hb_000417_260--Hb_001481_140 Hb_002918_290 Hb_002918_290 Hb_001284_030--Hb_002918_290 Hb_000042_200 Hb_000042_200 Hb_001284_030--Hb_000042_200 Hb_033153_060 Hb_033153_060 Hb_001284_030--Hb_033153_060 Hb_068056_030 Hb_068056_030 Hb_001284_030--Hb_068056_030 Hb_161175_010 Hb_161175_010 Hb_001284_030--Hb_161175_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1899 9.16155 19.3257 98.7 24.6751 47.7708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
134.135 157.486 174.468 77.2844 92.4231

CAGE analysis