Hb_002154_110

Information

Type -
Description -
Location Contig2154: 124395-127338
Sequence    

Annotation

kegg
ID rcu:RCOM_1620370
description SP1L, putative
nr
ID XP_011018777.1
description PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
swissprot
ID B3H4F1
description Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1
trembl
ID A0A067LB44
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15726 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein spiral1-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22280: 124395-127300 , PASA_asmbl_22281: 124404-127303
cDNA
(Sanger)
(ID:Location)		 002_L09.ab1: 124404-127303 , 040_P19.ab1: 124404-127303

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002154_110 0.0 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
2 Hb_003103_010 0.065594896 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008642_030 0.0715805713 - - PREDICTED: UMP-CMP kinase 3 isoform X1 [Jatropha curcas]
4 Hb_000016_170 0.1121931503 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000563_200 0.1152637641 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
6 Hb_006573_290 0.1160090926 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
7 Hb_145880_020 0.1171245362 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
8 Hb_005167_030 0.1208226998 - - PREDICTED: serine/threonine-protein kinase At5g01020-like, partial [Camelina sativa]
9 Hb_008206_100 0.1211269944 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
10 Hb_000946_100 0.1214863804 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
11 Hb_001489_110 0.1311104823 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
12 Hb_001208_030 0.1333868708 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011249_020 0.1337780736 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
14 Hb_158163_010 0.1368735474 - - protein binding protein, putative [Ricinus communis]
15 Hb_002876_020 0.1402357077 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
16 Hb_000120_770 0.1408712947 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001353_010 0.1416448517 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
18 Hb_148209_010 0.1433748266 - - RAS-related GTP-binding family protein [Populus trichocarpa]
19 Hb_000077_200 0.1450453848 - - PREDICTED: thioredoxin [Jatropha curcas]
20 Hb_000240_030 0.1450577513 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002154_110 Hb_002154_110 Hb_003103_010 Hb_003103_010 Hb_002154_110--Hb_003103_010 Hb_008642_030 Hb_008642_030 Hb_002154_110--Hb_008642_030 Hb_000016_170 Hb_000016_170 Hb_002154_110--Hb_000016_170 Hb_000563_200 Hb_000563_200 Hb_002154_110--Hb_000563_200 Hb_006573_290 Hb_006573_290 Hb_002154_110--Hb_006573_290 Hb_145880_020 Hb_145880_020 Hb_002154_110--Hb_145880_020 Hb_003103_010--Hb_008642_030 Hb_008206_100 Hb_008206_100 Hb_003103_010--Hb_008206_100 Hb_003103_010--Hb_006573_290 Hb_011249_020 Hb_011249_020 Hb_003103_010--Hb_011249_020 Hb_001195_070 Hb_001195_070 Hb_003103_010--Hb_001195_070 Hb_158163_010 Hb_158163_010 Hb_008642_030--Hb_158163_010 Hb_008642_030--Hb_000563_200 Hb_008642_030--Hb_000016_170 Hb_005167_030 Hb_005167_030 Hb_008642_030--Hb_005167_030 Hb_000016_170--Hb_005167_030 Hb_003880_040 Hb_003880_040 Hb_000016_170--Hb_003880_040 Hb_005496_090 Hb_005496_090 Hb_000016_170--Hb_005496_090 Hb_000946_100 Hb_000946_100 Hb_000016_170--Hb_000946_100 Hb_001410_060 Hb_001410_060 Hb_000563_200--Hb_001410_060 Hb_000563_200--Hb_145880_020 Hb_001353_010 Hb_001353_010 Hb_000563_200--Hb_001353_010 Hb_148209_010 Hb_148209_010 Hb_000563_200--Hb_148209_010 Hb_001123_160 Hb_001123_160 Hb_000563_200--Hb_001123_160 Hb_000563_200--Hb_003880_040 Hb_000649_140 Hb_000649_140 Hb_006573_290--Hb_000649_140 Hb_006573_290--Hb_148209_010 Hb_021409_080 Hb_021409_080 Hb_006573_290--Hb_021409_080 Hb_000428_060 Hb_000428_060 Hb_006573_290--Hb_000428_060 Hb_006573_290--Hb_000946_100 Hb_145880_020--Hb_001410_060 Hb_145880_020--Hb_148209_010 Hb_000110_120 Hb_000110_120 Hb_145880_020--Hb_000110_120 Hb_002303_060 Hb_002303_060 Hb_145880_020--Hb_002303_060 Hb_004627_030 Hb_004627_030 Hb_145880_020--Hb_004627_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3179 11.3758 26.9256 160.121 12.3591 35.2949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.1275 101.245 68.5088 41.4628 74.9795

CAGE analysis