Hb_004627_030

Information

Type -
Description -
Location Contig4627: 36375-39739
Sequence    

Annotation

kegg
ID rcu:RCOM_0332780
description ubiquitin-conjugating enzyme E2 C, putative (EC:6.3.2.19)
nr
ID XP_002533247.1
description ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
swissprot
ID Q9LJZ5
description Ubiquitin-conjugating enzyme E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1
trembl
ID B9T4S8
description Ubiquitin-conjugating enzyme E2 C, putative OS=Ricinus communis GN=RCOM_0332780 PE=3 SV=1
Gene Ontology
ID GO:0016874
description probable ubiquitin-conjugating enzyme e2 c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43816: 36436-39749 , PASA_asmbl_43817: 38417-39730
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004627_030 0.0 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
2 Hb_004800_100 0.0787461282 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002301_160 0.0804647012 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
4 Hb_021409_080 0.088663517 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
5 Hb_002045_070 0.0902116819 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
6 Hb_000300_430 0.0903680908 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
7 Hb_012305_130 0.09444785 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
8 Hb_000220_100 0.0956162461 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
9 Hb_001123_160 0.097057852 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_000110_120 0.0984720012 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
11 Hb_000173_410 0.0994069666 - - PREDICTED: BI1-like protein [Jatropha curcas]
12 Hb_000465_270 0.1018028442 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000563_200 0.1024022634 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
14 Hb_003622_040 0.1058488039 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
15 Hb_000252_100 0.1059029827 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
16 Hb_148209_010 0.1083854246 - - RAS-related GTP-binding family protein [Populus trichocarpa]
17 Hb_000060_050 0.11101656 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
18 Hb_000009_290 0.111114201 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
19 Hb_145880_020 0.1148934048 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
20 Hb_000608_050 0.1154783397 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_004627_030 Hb_004627_030 Hb_004800_100 Hb_004800_100 Hb_004627_030--Hb_004800_100 Hb_002301_160 Hb_002301_160 Hb_004627_030--Hb_002301_160 Hb_021409_080 Hb_021409_080 Hb_004627_030--Hb_021409_080 Hb_002045_070 Hb_002045_070 Hb_004627_030--Hb_002045_070 Hb_000300_430 Hb_000300_430 Hb_004627_030--Hb_000300_430 Hb_012305_130 Hb_012305_130 Hb_004627_030--Hb_012305_130 Hb_000252_100 Hb_000252_100 Hb_004800_100--Hb_000252_100 Hb_004800_100--Hb_000300_430 Hb_000173_410 Hb_000173_410 Hb_004800_100--Hb_000173_410 Hb_001123_160 Hb_001123_160 Hb_004800_100--Hb_001123_160 Hb_004800_100--Hb_002045_070 Hb_002301_160--Hb_002045_070 Hb_000110_120 Hb_000110_120 Hb_002301_160--Hb_000110_120 Hb_000009_290 Hb_000009_290 Hb_002301_160--Hb_000009_290 Hb_002042_150 Hb_002042_150 Hb_002301_160--Hb_002042_150 Hb_001489_110 Hb_001489_110 Hb_002301_160--Hb_001489_110 Hb_021409_080--Hb_012305_130 Hb_111985_110 Hb_111985_110 Hb_021409_080--Hb_111985_110 Hb_180343_010 Hb_180343_010 Hb_021409_080--Hb_180343_010 Hb_002110_100 Hb_002110_100 Hb_021409_080--Hb_002110_100 Hb_021409_080--Hb_000110_120 Hb_000220_100 Hb_000220_100 Hb_002045_070--Hb_000220_100 Hb_004108_220 Hb_004108_220 Hb_002045_070--Hb_004108_220 Hb_033594_080 Hb_033594_080 Hb_002045_070--Hb_033594_080 Hb_000749_050 Hb_000749_050 Hb_002045_070--Hb_000749_050 Hb_002045_070--Hb_000009_290 Hb_003622_040 Hb_003622_040 Hb_000300_430--Hb_003622_040 Hb_000982_080 Hb_000982_080 Hb_000300_430--Hb_000982_080 Hb_011344_190 Hb_011344_190 Hb_000300_430--Hb_011344_190 Hb_000300_430--Hb_001123_160 Hb_000300_430--Hb_000173_410 Hb_012305_130--Hb_000110_120 Hb_000964_030 Hb_000964_030 Hb_012305_130--Hb_000964_030 Hb_028049_010 Hb_028049_010 Hb_012305_130--Hb_028049_010 Hb_012305_130--Hb_002110_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.55572 4.82459 5.92029 18.373 3.9415 2.32416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1844 13.0663 11.2038 8.04408 6.4492

CAGE analysis