Hb_004800_100

Information

Type -
Description -
Location Contig4800: 78662-79729
Sequence    

Annotation

kegg
ID rcu:RCOM_0536180
description hypothetical protein
nr
ID XP_002521581.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FGY4
description F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1
trembl
ID B9S6G2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0536180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44689: 77147-79900
cDNA
(Sanger)
(ID:Location)		 015_A03.ab1: 77147-78933

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000252_100 0.0775322698 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
3 Hb_004627_030 0.0787461282 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
4 Hb_000300_430 0.0792393829 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
5 Hb_000173_410 0.0796265416 - - PREDICTED: BI1-like protein [Jatropha curcas]
6 Hb_001123_160 0.0897273067 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_002045_070 0.0933456919 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
8 Hb_017131_010 0.0943847157 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
9 Hb_000521_130 0.0946357217 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
10 Hb_000928_110 0.0949390132 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
11 Hb_007218_120 0.0959747694 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
12 Hb_000454_090 0.0962335871 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
13 Hb_002119_130 0.098070475 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
14 Hb_000749_050 0.0985457775 - - mitochondrial thioredoxin [Hevea brasiliensis]
15 Hb_011344_190 0.0988680928 - - PREDICTED: maspardin [Jatropha curcas]
16 Hb_003622_040 0.0990047444 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
17 Hb_000140_380 0.0997817254 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
18 Hb_005765_050 0.1030914737 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
19 Hb_002681_200 0.1035634011 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
20 Hb_003360_040 0.1044509166 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]

Gene co-expression network

sample Hb_004800_100 Hb_004800_100 Hb_000252_100 Hb_000252_100 Hb_004800_100--Hb_000252_100 Hb_004627_030 Hb_004627_030 Hb_004800_100--Hb_004627_030 Hb_000300_430 Hb_000300_430 Hb_004800_100--Hb_000300_430 Hb_000173_410 Hb_000173_410 Hb_004800_100--Hb_000173_410 Hb_001123_160 Hb_001123_160 Hb_004800_100--Hb_001123_160 Hb_002045_070 Hb_002045_070 Hb_004800_100--Hb_002045_070 Hb_000454_090 Hb_000454_090 Hb_000252_100--Hb_000454_090 Hb_000252_100--Hb_000173_410 Hb_003305_040 Hb_003305_040 Hb_000252_100--Hb_003305_040 Hb_000140_380 Hb_000140_380 Hb_000252_100--Hb_000140_380 Hb_000060_050 Hb_000060_050 Hb_000252_100--Hb_000060_050 Hb_000505_150 Hb_000505_150 Hb_000252_100--Hb_000505_150 Hb_002301_160 Hb_002301_160 Hb_004627_030--Hb_002301_160 Hb_021409_080 Hb_021409_080 Hb_004627_030--Hb_021409_080 Hb_004627_030--Hb_002045_070 Hb_004627_030--Hb_000300_430 Hb_012305_130 Hb_012305_130 Hb_004627_030--Hb_012305_130 Hb_003622_040 Hb_003622_040 Hb_000300_430--Hb_003622_040 Hb_000982_080 Hb_000982_080 Hb_000300_430--Hb_000982_080 Hb_011344_190 Hb_011344_190 Hb_000300_430--Hb_011344_190 Hb_000300_430--Hb_001123_160 Hb_000300_430--Hb_000173_410 Hb_000173_410--Hb_000454_090 Hb_000220_100 Hb_000220_100 Hb_000173_410--Hb_000220_100 Hb_000359_060 Hb_000359_060 Hb_000173_410--Hb_000359_060 Hb_005765_050 Hb_005765_050 Hb_000173_410--Hb_005765_050 Hb_004078_040 Hb_004078_040 Hb_000173_410--Hb_004078_040 Hb_008232_010 Hb_008232_010 Hb_001123_160--Hb_008232_010 Hb_001123_160--Hb_003622_040 Hb_003291_020 Hb_003291_020 Hb_001123_160--Hb_003291_020 Hb_148209_010 Hb_148209_010 Hb_001123_160--Hb_148209_010 Hb_000563_200 Hb_000563_200 Hb_001123_160--Hb_000563_200 Hb_002045_070--Hb_002301_160 Hb_002045_070--Hb_000220_100 Hb_004108_220 Hb_004108_220 Hb_002045_070--Hb_004108_220 Hb_033594_080 Hb_033594_080 Hb_002045_070--Hb_033594_080 Hb_000749_050 Hb_000749_050 Hb_002045_070--Hb_000749_050 Hb_000009_290 Hb_000009_290 Hb_002045_070--Hb_000009_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.92983 7.34053 8.19991 20.6707 3.30073 4.52803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9413 16.4626 18.7454 13.3829 7.77805

CAGE analysis