Hb_000749_050

Information

Type -
Description -
Location Contig749: 30366-32332
Sequence    

Annotation

kegg
ID rcu:RCOM_1209610
description thioredoxin m(mitochondrial)-type, putative
nr
ID AEC03324.1
description mitochondrial thioredoxin [Hevea brasiliensis]
swissprot
ID Q9XGS0
description Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1
trembl
ID I1SSJ5
description Mitochondrial thioredoxin OS=Hevea brasiliensis GN=TrxM PE=2 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56776: 30405-32325
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_050 0.0 - - mitochondrial thioredoxin [Hevea brasiliensis]
2 Hb_000465_300 0.0645803821 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
3 Hb_002045_070 0.0756615071 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
4 Hb_000173_470 0.0823000315 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
5 Hb_000890_150 0.0826871502 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
6 Hb_000215_320 0.0838728904 - - phosphofructokinase [Hevea brasiliensis]
7 Hb_011218_090 0.0841368246 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
8 Hb_004108_220 0.0902157122 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
9 Hb_000359_060 0.0910013046 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
10 Hb_000220_100 0.0924189459 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
11 Hb_007218_120 0.0953002064 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
12 Hb_000110_140 0.0954859407 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
13 Hb_034688_020 0.0962075918 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
14 Hb_004800_100 0.0985457775 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003376_180 0.0987858139 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
16 Hb_033594_080 0.0999130835 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
17 Hb_003994_260 0.100190614 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
18 Hb_005074_030 0.1004968393 - - -
19 Hb_163256_020 0.100928263 - - fructokinase [Manihot esculenta]
20 Hb_000723_230 0.1018733141 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]

Gene co-expression network

sample Hb_000749_050 Hb_000749_050 Hb_000465_300 Hb_000465_300 Hb_000749_050--Hb_000465_300 Hb_002045_070 Hb_002045_070 Hb_000749_050--Hb_002045_070 Hb_000173_470 Hb_000173_470 Hb_000749_050--Hb_000173_470 Hb_000890_150 Hb_000890_150 Hb_000749_050--Hb_000890_150 Hb_000215_320 Hb_000215_320 Hb_000749_050--Hb_000215_320 Hb_011218_090 Hb_011218_090 Hb_000749_050--Hb_011218_090 Hb_000465_300--Hb_000173_470 Hb_163256_020 Hb_163256_020 Hb_000465_300--Hb_163256_020 Hb_000723_230 Hb_000723_230 Hb_000465_300--Hb_000723_230 Hb_000465_300--Hb_000890_150 Hb_000465_300--Hb_002045_070 Hb_002301_160 Hb_002301_160 Hb_002045_070--Hb_002301_160 Hb_000220_100 Hb_000220_100 Hb_002045_070--Hb_000220_100 Hb_004108_220 Hb_004108_220 Hb_002045_070--Hb_004108_220 Hb_033594_080 Hb_033594_080 Hb_002045_070--Hb_033594_080 Hb_000009_290 Hb_000009_290 Hb_002045_070--Hb_000009_290 Hb_003607_130 Hb_003607_130 Hb_000173_470--Hb_003607_130 Hb_000753_230 Hb_000753_230 Hb_000173_470--Hb_000753_230 Hb_023771_010 Hb_023771_010 Hb_000173_470--Hb_023771_010 Hb_000173_470--Hb_000890_150 Hb_000359_060 Hb_000359_060 Hb_000890_150--Hb_000359_060 Hb_000890_150--Hb_033594_080 Hb_000890_150--Hb_011218_090 Hb_000049_210 Hb_000049_210 Hb_000890_150--Hb_000049_210 Hb_000787_020 Hb_000787_020 Hb_000890_150--Hb_000787_020 Hb_004078_040 Hb_004078_040 Hb_000890_150--Hb_004078_040 Hb_000215_320--Hb_000890_150 Hb_000215_320--Hb_033594_080 Hb_004117_110 Hb_004117_110 Hb_000215_320--Hb_004117_110 Hb_000538_230 Hb_000538_230 Hb_000215_320--Hb_000538_230 Hb_017387_010 Hb_017387_010 Hb_000215_320--Hb_017387_010 Hb_011218_090--Hb_000359_060 Hb_011218_090--Hb_000049_210 Hb_004157_050 Hb_004157_050 Hb_011218_090--Hb_004157_050 Hb_149985_010 Hb_149985_010 Hb_011218_090--Hb_149985_010 Hb_000029_140 Hb_000029_140 Hb_011218_090--Hb_000029_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.1666 63.9332 40.7559 80.9237 18.7662 21.1562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.384 77.0196 63.9189 59.0353 36.3163

CAGE analysis