Hb_000538_230

Information

Type -
Description -
Location Contig538: 251715-261593
Sequence    

Annotation

kegg
ID rcu:RCOM_0764880
description Auxin response factor, putative
nr
ID XP_012074114.1
description PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
swissprot
ID Q9FGV1
description Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2
trembl
ID A0A067KWZ2
description Auxin response factor OS=Jatropha curcas GN=JCGZ_09784 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47681: 251823-261552 , PASA_asmbl_47684: 255008-255311
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000538_230 0.0 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
2 Hb_000430_020 0.0759291265 - - -
3 Hb_000215_320 0.0808032008 - - phosphofructokinase [Hevea brasiliensis]
4 Hb_001159_110 0.0962448523 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
5 Hb_005074_030 0.0979355283 - - -
6 Hb_001205_240 0.0991919962 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
7 Hb_003761_010 0.099555946 - - alcohol dehydrogenase, putative [Ricinus communis]
8 Hb_034688_020 0.1008739595 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
9 Hb_000890_150 0.1019285181 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
10 Hb_002042_130 0.1027732631 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
11 Hb_000028_370 0.1057043498 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
12 Hb_004143_040 0.1057438374 - - argininosuccinate lyase, putative [Ricinus communis]
13 Hb_004117_110 0.1065722767 - - hypothetical protein POPTR_0016s14420g [Populus trichocarpa]
14 Hb_001969_080 0.107097292 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
15 Hb_000710_060 0.1073966401 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
16 Hb_000230_390 0.1092353805 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
17 Hb_007508_090 0.1110600094 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
18 Hb_028285_010 0.1121544948 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
19 Hb_000649_110 0.1127258167 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
20 Hb_000357_110 0.1135555559 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000538_230 Hb_000538_230 Hb_000430_020 Hb_000430_020 Hb_000538_230--Hb_000430_020 Hb_000215_320 Hb_000215_320 Hb_000538_230--Hb_000215_320 Hb_001159_110 Hb_001159_110 Hb_000538_230--Hb_001159_110 Hb_005074_030 Hb_005074_030 Hb_000538_230--Hb_005074_030 Hb_001205_240 Hb_001205_240 Hb_000538_230--Hb_001205_240 Hb_003761_010 Hb_003761_010 Hb_000538_230--Hb_003761_010 Hb_000430_020--Hb_005074_030 Hb_015807_150 Hb_015807_150 Hb_000430_020--Hb_015807_150 Hb_000890_150 Hb_000890_150 Hb_000430_020--Hb_000890_150 Hb_000430_020--Hb_001159_110 Hb_000178_130 Hb_000178_130 Hb_000430_020--Hb_000178_130 Hb_000215_320--Hb_000890_150 Hb_033594_080 Hb_033594_080 Hb_000215_320--Hb_033594_080 Hb_004117_110 Hb_004117_110 Hb_000215_320--Hb_004117_110 Hb_000749_050 Hb_000749_050 Hb_000215_320--Hb_000749_050 Hb_017387_010 Hb_017387_010 Hb_000215_320--Hb_017387_010 Hb_000230_390 Hb_000230_390 Hb_001159_110--Hb_000230_390 Hb_001159_110--Hb_005074_030 Hb_000614_250 Hb_000614_250 Hb_001159_110--Hb_000614_250 Hb_004453_050 Hb_004453_050 Hb_001159_110--Hb_004453_050 Hb_007508_090 Hb_007508_090 Hb_001159_110--Hb_007508_090 Hb_001123_060 Hb_001123_060 Hb_005074_030--Hb_001123_060 Hb_000649_130 Hb_000649_130 Hb_005074_030--Hb_000649_130 Hb_005074_030--Hb_000749_050 Hb_000028_370 Hb_000028_370 Hb_001205_240--Hb_000028_370 Hb_001205_240--Hb_003761_010 Hb_008725_230 Hb_008725_230 Hb_001205_240--Hb_008725_230 Hb_002205_110 Hb_002205_110 Hb_001205_240--Hb_002205_110 Hb_000732_010 Hb_000732_010 Hb_001205_240--Hb_000732_010 Hb_000710_060 Hb_000710_060 Hb_001205_240--Hb_000710_060 Hb_000185_030 Hb_000185_030 Hb_003761_010--Hb_000185_030 Hb_028285_010 Hb_028285_010 Hb_003761_010--Hb_028285_010 Hb_003761_010--Hb_002205_110 Hb_003761_010--Hb_000028_370 Hb_002232_410 Hb_002232_410 Hb_003761_010--Hb_002232_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1793 23.5137 8.11224 22.2756 8.76356 10.8346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1541 16.3653 18.0177 14.7801 6.65994

CAGE analysis