Hb_000178_130

Information

Type -
Description -
Location Contig178: 252748-257332
Sequence    

Annotation

kegg
ID rcu:RCOM_1202230
description inorganic pyrophosphatase, putative (EC:3.6.1.1)
nr
ID AFP74893.1
description soluble inorganic pyrophosphatase [Hevea brasiliensis]
swissprot
ID Q9LFF9
description Soluble inorganic pyrophosphatase 4 OS=Arabidopsis thaliana GN=PPA4 PE=1 SV=1
trembl
ID S4SQL4
description Soluble inorganic pyrophosphatase OS=Hevea brasiliensis GN=SIP1 PE=2 SV=1
Gene Ontology
ID GO:0005737
description soluble inorganic pyrophosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17101: 252691-257379 , PASA_asmbl_17102: 255027-255626 , PASA_asmbl_17104: 256265-257073 , PASA_asmbl_17105: 253202-253561
cDNA
(Sanger)
(ID:Location)		 027_I19.ab1: 253703-257376

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000178_130 0.0 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
2 Hb_005306_190 0.0890807921 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
3 Hb_000430_020 0.0891408274 - - -
4 Hb_004994_140 0.0906555526 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]
5 Hb_000417_040 0.0933556543 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
6 Hb_003389_040 0.0934131955 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
7 Hb_001123_060 0.0966555232 - - PREDICTED: ALBINO3-like protein 2, chloroplastic [Jatropha curcas]
8 Hb_002813_040 0.0971413676 - - PREDICTED: PRA1 family protein G2 [Jatropha curcas]
9 Hb_095296_010 0.1004541482 - - PREDICTED: syntaxin-32 [Jatropha curcas]
10 Hb_005074_030 0.1005746151 - - -
11 Hb_000032_380 0.1028055585 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000120_330 0.1059452481 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000905_060 0.1062107035 - - protein with unknown function [Ricinus communis]
14 Hb_029388_020 0.1067685343 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008226_060 0.1082559682 - - PREDICTED: folic acid synthesis protein fol1-like [Jatropha curcas]
16 Hb_005846_040 0.1083347479 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
17 Hb_000342_060 0.1092046509 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial-like isoform X1 [Nicotiana sylvestris]
18 Hb_000868_110 0.109290298 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
19 Hb_001159_110 0.1104081534 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
20 Hb_005365_030 0.1110487536 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]

Gene co-expression network

sample Hb_000178_130 Hb_000178_130 Hb_005306_190 Hb_005306_190 Hb_000178_130--Hb_005306_190 Hb_000430_020 Hb_000430_020 Hb_000178_130--Hb_000430_020 Hb_004994_140 Hb_004994_140 Hb_000178_130--Hb_004994_140 Hb_000417_040 Hb_000417_040 Hb_000178_130--Hb_000417_040 Hb_003389_040 Hb_003389_040 Hb_000178_130--Hb_003389_040 Hb_001123_060 Hb_001123_060 Hb_000178_130--Hb_001123_060 Hb_000357_110 Hb_000357_110 Hb_005306_190--Hb_000357_110 Hb_095296_010 Hb_095296_010 Hb_005306_190--Hb_095296_010 Hb_005116_060 Hb_005116_060 Hb_005306_190--Hb_005116_060 Hb_007943_050 Hb_007943_050 Hb_005306_190--Hb_007943_050 Hb_000179_070 Hb_000179_070 Hb_005306_190--Hb_000179_070 Hb_005074_030 Hb_005074_030 Hb_000430_020--Hb_005074_030 Hb_000538_230 Hb_000538_230 Hb_000430_020--Hb_000538_230 Hb_015807_150 Hb_015807_150 Hb_000430_020--Hb_015807_150 Hb_000890_150 Hb_000890_150 Hb_000430_020--Hb_000890_150 Hb_001159_110 Hb_001159_110 Hb_000430_020--Hb_001159_110 Hb_000069_420 Hb_000069_420 Hb_004994_140--Hb_000069_420 Hb_007416_320 Hb_007416_320 Hb_004994_140--Hb_007416_320 Hb_012107_060 Hb_012107_060 Hb_004994_140--Hb_012107_060 Hb_003376_350 Hb_003376_350 Hb_004994_140--Hb_003376_350 Hb_005846_040 Hb_005846_040 Hb_004994_140--Hb_005846_040 Hb_000062_220 Hb_000062_220 Hb_004994_140--Hb_000062_220 Hb_000406_080 Hb_000406_080 Hb_000417_040--Hb_000406_080 Hb_000417_040--Hb_003389_040 Hb_000417_040--Hb_005846_040 Hb_000032_380 Hb_000032_380 Hb_000417_040--Hb_000032_380 Hb_007101_300 Hb_007101_300 Hb_000417_040--Hb_007101_300 Hb_000032_270 Hb_000032_270 Hb_000417_040--Hb_000032_270 Hb_008226_060 Hb_008226_060 Hb_003389_040--Hb_008226_060 Hb_003389_040--Hb_007101_300 Hb_003389_040--Hb_000032_380 Hb_003389_040--Hb_000357_110 Hb_156635_010 Hb_156635_010 Hb_003389_040--Hb_156635_010 Hb_010423_030 Hb_010423_030 Hb_001123_060--Hb_010423_030 Hb_000329_340 Hb_000329_340 Hb_001123_060--Hb_000329_340 Hb_001278_100 Hb_001278_100 Hb_001123_060--Hb_001278_100 Hb_001123_060--Hb_000032_380 Hb_001123_060--Hb_003389_040 Hb_001030_020 Hb_001030_020 Hb_001123_060--Hb_001030_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.895 105.463 57.8852 91.1321 64.2295 54.0026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.7744 154.404 101.979 54.8646 24.4366

CAGE analysis