Hb_005306_190

Information

Type -
Description -
Location Contig5306: 125739-126915
Sequence    

Annotation

kegg
ID rcu:RCOM_0654790
description Mitochondrial import inner membrane translocase subunit tim23, putative
nr
ID XP_002521370.1
description Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
swissprot
ID Q9LNQ1
description Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana GN=TIM23-1 PE=2 SV=1
trembl
ID B9S5V1
description Mitochondrial import inner membrane translocase subunit tim23, putative OS=Ricinus communis GN=RCOM_0654790 PE=4 SV=1
Gene Ontology
ID GO:0005744
description mitochondrial import inner membrane translocase subunit tim23-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47374: 126084-127115
cDNA
(Sanger)
(ID:Location)		 007_K16.ab1: 126315-127115 , 013_A11.ab1: 126501-127004 , 014_P06.ab1: 126454-127115 , 032_E05.ab1: 126486-127007

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005306_190 0.0 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
2 Hb_000357_110 0.0736395601 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
3 Hb_095296_010 0.0791331328 - - PREDICTED: syntaxin-32 [Jatropha curcas]
4 Hb_005116_060 0.0879098553 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
5 Hb_007943_050 0.0887213592 - - peroxiredoxin, putative [Ricinus communis]
6 Hb_000178_130 0.0890807921 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
7 Hb_000179_070 0.0939147197 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
8 Hb_003175_030 0.0948232854 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
9 Hb_000868_110 0.0949172675 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
10 Hb_005207_050 0.0950372957 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 39 [Jatropha curcas]
11 Hb_000120_330 0.0970139876 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000886_050 0.0980489182 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
13 Hb_010997_080 0.0993325808 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]
14 Hb_004586_140 0.0994485034 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
15 Hb_005048_130 0.099749009 - - hypothetical protein POPTR_0004s03700g [Populus trichocarpa]
16 Hb_003389_040 0.0999111489 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
17 Hb_000649_110 0.1019547015 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
18 Hb_003020_270 0.1026121009 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
19 Hb_010381_030 0.1033181334 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
20 Hb_006816_350 0.1051759164 - - PREDICTED: syntaxin-43 [Jatropha curcas]

Gene co-expression network

sample Hb_005306_190 Hb_005306_190 Hb_000357_110 Hb_000357_110 Hb_005306_190--Hb_000357_110 Hb_095296_010 Hb_095296_010 Hb_005306_190--Hb_095296_010 Hb_005116_060 Hb_005116_060 Hb_005306_190--Hb_005116_060 Hb_007943_050 Hb_007943_050 Hb_005306_190--Hb_007943_050 Hb_000178_130 Hb_000178_130 Hb_005306_190--Hb_000178_130 Hb_000179_070 Hb_000179_070 Hb_005306_190--Hb_000179_070 Hb_002205_110 Hb_002205_110 Hb_000357_110--Hb_002205_110 Hb_003389_040 Hb_003389_040 Hb_000357_110--Hb_003389_040 Hb_006816_350 Hb_006816_350 Hb_000357_110--Hb_006816_350 Hb_010997_080 Hb_010997_080 Hb_000357_110--Hb_010997_080 Hb_004586_140 Hb_004586_140 Hb_000357_110--Hb_004586_140 Hb_000868_110 Hb_000868_110 Hb_095296_010--Hb_000868_110 Hb_002073_200 Hb_002073_200 Hb_095296_010--Hb_002073_200 Hb_095296_010--Hb_005116_060 Hb_003020_270 Hb_003020_270 Hb_095296_010--Hb_003020_270 Hb_095296_010--Hb_006816_350 Hb_000869_080 Hb_000869_080 Hb_095296_010--Hb_000869_080 Hb_000340_400 Hb_000340_400 Hb_005116_060--Hb_000340_400 Hb_007035_050 Hb_007035_050 Hb_005116_060--Hb_007035_050 Hb_006478_040 Hb_006478_040 Hb_005116_060--Hb_006478_040 Hb_001030_020 Hb_001030_020 Hb_005116_060--Hb_001030_020 Hb_003001_080 Hb_003001_080 Hb_005116_060--Hb_003001_080 Hb_000045_300 Hb_000045_300 Hb_007943_050--Hb_000045_300 Hb_009545_090 Hb_009545_090 Hb_007943_050--Hb_009545_090 Hb_000210_010 Hb_000210_010 Hb_007943_050--Hb_000210_010 Hb_007943_050--Hb_095296_010 Hb_010519_040 Hb_010519_040 Hb_007943_050--Hb_010519_040 Hb_000430_020 Hb_000430_020 Hb_000178_130--Hb_000430_020 Hb_004994_140 Hb_004994_140 Hb_000178_130--Hb_004994_140 Hb_000417_040 Hb_000417_040 Hb_000178_130--Hb_000417_040 Hb_000178_130--Hb_003389_040 Hb_001123_060 Hb_001123_060 Hb_000178_130--Hb_001123_060 Hb_000179_070--Hb_004586_140 Hb_000179_070--Hb_006816_350 Hb_000179_070--Hb_003020_270 Hb_000661_290 Hb_000661_290 Hb_000179_070--Hb_000661_290 Hb_000179_070--Hb_095296_010 Hb_000696_090 Hb_000696_090 Hb_000179_070--Hb_000696_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1629 31.2974 13.4764 20.0569 12.9489 13.9812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3207 27.7605 14.5776 12.1707 6.64375

CAGE analysis