Hb_000179_070

Information

Type -
Description -
Location Contig179: 85617-88545
Sequence    

Annotation

kegg
ID cic:CICLE_v10009411mg
description hypothetical protein
nr
ID XP_006451568.1
description hypothetical protein CICLE_v10009411mg [Citrus clementina]
swissprot
ID Q9SKI2
description Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2
trembl
ID A0A067F5W0
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043389mg PE=4 SV=1
Gene Ontology
ID GO:0007034
description vacuolar protein sorting-associated protein 2 homolog 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17277: 85642-88448 , PASA_asmbl_17278: 86368-86529
cDNA
(Sanger)
(ID:Location)		 044_P24.ab1: 85814-88390 , 050_J17.ab1: 85866-88390

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_070 0.0 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
2 Hb_004586_140 0.0505042565 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
3 Hb_006816_350 0.0811999425 - - PREDICTED: syntaxin-43 [Jatropha curcas]
4 Hb_003020_270 0.0818715882 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
5 Hb_000661_290 0.0856674828 - - PREDICTED: NAD(H) kinase 1-like isoform X1 [Populus euphratica]
6 Hb_095296_010 0.0881633194 - - PREDICTED: syntaxin-32 [Jatropha curcas]
7 Hb_000696_090 0.0905964135 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
8 Hb_000061_470 0.0910575305 - - PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and endonuclease ZRANB3 [Jatropha curcas]
9 Hb_008511_090 0.0918656678 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
10 Hb_005016_160 0.0928380354 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
11 Hb_003747_220 0.0938569642 - - PREDICTED: syntaxin-22-like isoform X2 [Jatropha curcas]
12 Hb_000868_110 0.0939128609 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
13 Hb_005306_190 0.0939147197 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
14 Hb_005541_010 0.0942141256 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
15 Hb_000125_170 0.0964653793 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
16 Hb_003052_140 0.0966653561 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
17 Hb_000357_110 0.097780792 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
18 Hb_012055_060 0.0979880951 - - PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]
19 Hb_000878_070 0.1009082318 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
20 Hb_000521_320 0.1014543928 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]

Gene co-expression network

sample Hb_000179_070 Hb_000179_070 Hb_004586_140 Hb_004586_140 Hb_000179_070--Hb_004586_140 Hb_006816_350 Hb_006816_350 Hb_000179_070--Hb_006816_350 Hb_003020_270 Hb_003020_270 Hb_000179_070--Hb_003020_270 Hb_000661_290 Hb_000661_290 Hb_000179_070--Hb_000661_290 Hb_095296_010 Hb_095296_010 Hb_000179_070--Hb_095296_010 Hb_000696_090 Hb_000696_090 Hb_000179_070--Hb_000696_090 Hb_012389_020 Hb_012389_020 Hb_004586_140--Hb_012389_020 Hb_000302_270 Hb_000302_270 Hb_004586_140--Hb_000302_270 Hb_000061_470 Hb_000061_470 Hb_004586_140--Hb_000061_470 Hb_000308_030 Hb_000308_030 Hb_004586_140--Hb_000308_030 Hb_000521_320 Hb_000521_320 Hb_004586_140--Hb_000521_320 Hb_006816_350--Hb_000661_290 Hb_006816_350--Hb_095296_010 Hb_006816_350--Hb_003020_270 Hb_000357_110 Hb_000357_110 Hb_006816_350--Hb_000357_110 Hb_000868_110 Hb_000868_110 Hb_006816_350--Hb_000868_110 Hb_003020_270--Hb_095296_010 Hb_003020_270--Hb_000868_110 Hb_002553_040 Hb_002553_040 Hb_003020_270--Hb_002553_040 Hb_003020_270--Hb_000696_090 Hb_000661_290--Hb_000521_320 Hb_000661_290--Hb_000868_110 Hb_002671_140 Hb_002671_140 Hb_000661_290--Hb_002671_140 Hb_000661_290--Hb_004586_140 Hb_013399_100 Hb_013399_100 Hb_000661_290--Hb_013399_100 Hb_095296_010--Hb_000868_110 Hb_002073_200 Hb_002073_200 Hb_095296_010--Hb_002073_200 Hb_005116_060 Hb_005116_060 Hb_095296_010--Hb_005116_060 Hb_000869_080 Hb_000869_080 Hb_095296_010--Hb_000869_080 Hb_003142_030 Hb_003142_030 Hb_000696_090--Hb_003142_030 Hb_152175_010 Hb_152175_010 Hb_000696_090--Hb_152175_010 Hb_000696_090--Hb_095296_010 Hb_012055_060 Hb_012055_060 Hb_000696_090--Hb_012055_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
181.285 250.788 137.826 136.041 159.527 147.155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
177.67 200.1 172.665 76.828 41.9126

CAGE analysis