Hb_003142_030

Information

Type -
Description -
Location Contig3142: 19106-24398
Sequence    

Annotation

kegg
ID rcu:RCOM_1579380
description ATP binding protein, putative
nr
ID XP_012090077.1
description PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic [Jatropha curcas]
swissprot
ID Q9LV04
description Probable plastid-lipid-associated protein 14, chloroplastic OS=Arabidopsis thaliana GN=PAP14 PE=1 SV=1
trembl
ID B9RII2
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1579380 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable plastid-lipid-associated protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33202: 19211-24197
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003142_030 0.0 - - PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic [Jatropha curcas]
2 Hb_000696_090 0.0772795513 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
3 Hb_152175_010 0.0787285689 - - Protein grpE, putative [Ricinus communis]
4 Hb_003001_080 0.0790768274 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
5 Hb_000424_060 0.0793334031 - - PREDICTED: myosin-15 [Jatropha curcas]
6 Hb_001227_030 0.0803387341 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
7 Hb_003929_280 0.0804258196 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
8 Hb_000886_050 0.0810834534 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
9 Hb_005489_020 0.0830102986 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004837_180 0.0860334206 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
11 Hb_000331_680 0.0865061913 - - Protein bem46, putative [Ricinus communis]
12 Hb_007590_020 0.0865132805 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
13 Hb_000861_080 0.0881635204 - - PREDICTED: protein ELC-like [Jatropha curcas]
14 Hb_002890_290 0.0885961265 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
15 Hb_005288_170 0.088665066 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Populus euphratica]
16 Hb_005116_060 0.0889890306 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
17 Hb_000010_110 0.089554653 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
18 Hb_004236_050 0.0903605214 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
19 Hb_000340_400 0.0907712029 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
20 Hb_011930_020 0.0913016395 - - PREDICTED: uncharacterized protein LOC105649787 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003142_030 Hb_003142_030 Hb_000696_090 Hb_000696_090 Hb_003142_030--Hb_000696_090 Hb_152175_010 Hb_152175_010 Hb_003142_030--Hb_152175_010 Hb_003001_080 Hb_003001_080 Hb_003142_030--Hb_003001_080 Hb_000424_060 Hb_000424_060 Hb_003142_030--Hb_000424_060 Hb_001227_030 Hb_001227_030 Hb_003142_030--Hb_001227_030 Hb_003929_280 Hb_003929_280 Hb_003142_030--Hb_003929_280 Hb_000696_090--Hb_152175_010 Hb_095296_010 Hb_095296_010 Hb_000696_090--Hb_095296_010 Hb_003020_270 Hb_003020_270 Hb_000696_090--Hb_003020_270 Hb_012055_060 Hb_012055_060 Hb_000696_090--Hb_012055_060 Hb_000179_070 Hb_000179_070 Hb_000696_090--Hb_000179_070 Hb_005137_050 Hb_005137_050 Hb_152175_010--Hb_005137_050 Hb_152175_010--Hb_003001_080 Hb_000563_230 Hb_000563_230 Hb_152175_010--Hb_000563_230 Hb_002890_290 Hb_002890_290 Hb_152175_010--Hb_002890_290 Hb_152175_010--Hb_001227_030 Hb_142368_010 Hb_142368_010 Hb_152175_010--Hb_142368_010 Hb_001163_050 Hb_001163_050 Hb_003001_080--Hb_001163_050 Hb_000340_400 Hb_000340_400 Hb_003001_080--Hb_000340_400 Hb_008453_140 Hb_008453_140 Hb_003001_080--Hb_008453_140 Hb_004837_180 Hb_004837_180 Hb_003001_080--Hb_004837_180 Hb_032202_140 Hb_032202_140 Hb_003001_080--Hb_032202_140 Hb_002820_030 Hb_002820_030 Hb_000424_060--Hb_002820_030 Hb_000181_090 Hb_000181_090 Hb_000424_060--Hb_000181_090 Hb_001951_200 Hb_001951_200 Hb_000424_060--Hb_001951_200 Hb_007533_010 Hb_007533_010 Hb_000424_060--Hb_007533_010 Hb_000010_110 Hb_000010_110 Hb_000424_060--Hb_000010_110 Hb_005489_020 Hb_005489_020 Hb_001227_030--Hb_005489_020 Hb_000025_410 Hb_000025_410 Hb_001227_030--Hb_000025_410 Hb_001227_030--Hb_002890_290 Hb_005779_080 Hb_005779_080 Hb_001227_030--Hb_005779_080 Hb_001227_030--Hb_004837_180 Hb_004236_050 Hb_004236_050 Hb_003929_280--Hb_004236_050 Hb_003929_280--Hb_004837_180 Hb_003927_040 Hb_003927_040 Hb_003929_280--Hb_003927_040 Hb_012384_030 Hb_012384_030 Hb_003929_280--Hb_012384_030 Hb_000803_070 Hb_000803_070 Hb_003929_280--Hb_000803_070 Hb_002217_110 Hb_002217_110 Hb_003929_280--Hb_002217_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0208 21.1596 15.6836 9.74402 11.6072 13.9658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.0184 15.9735 9.61186 6.94834 12.1146

CAGE analysis