Hb_007533_010

Information

Type transcription factor
Description TF Family: bZIP
Location Contig7533: 23702-31288
Sequence    

Annotation

kegg
ID rcu:RCOM_0553250
description G-box-binding factor, putative
nr
ID XP_002525106.1
description G-box-binding factor, putative [Ricinus communis]
swissprot
ID P42774
description G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2
trembl
ID B9SGI7
description G-box-binding factor, putative OS=Ricinus communis GN=RCOM_0553250 PE=4 SV=1
Gene Ontology
ID GO:0005634
description g-box-binding factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56938: 23759-25948 , PASA_asmbl_56939: 24159-25971 , PASA_asmbl_56940: 26042-31269
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007533_010 0.0 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
2 Hb_000025_780 0.0888573504 - - PREDICTED: sanguinarine reductase [Jatropha curcas]
3 Hb_002338_020 0.0915786949 - - PREDICTED: serine/arginine-rich splicing factor SR34A [Jatropha curcas]
4 Hb_000227_170 0.0943326245 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
5 Hb_002542_040 0.0951125553 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
6 Hb_000181_090 0.0953377573 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
7 Hb_000424_060 0.0969010886 - - PREDICTED: myosin-15 [Jatropha curcas]
8 Hb_012395_230 0.0972426449 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
9 Hb_007885_060 0.0976841463 - - replication factor C 40 kDa family protein [Populus trichocarpa]
10 Hb_004453_130 0.0992637446 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
11 Hb_000010_110 0.100286271 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
12 Hb_142368_010 0.1011808225 - - mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]
13 Hb_012340_090 0.102137498 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
14 Hb_003638_130 0.103511466 - - PREDICTED: uncharacterized protein LOC105645779 [Jatropha curcas]
15 Hb_146673_010 0.1040264823 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
16 Hb_002184_110 0.1067389857 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
17 Hb_011930_020 0.1070351041 - - PREDICTED: uncharacterized protein LOC105649787 isoform X1 [Jatropha curcas]
18 Hb_002820_050 0.1082282654 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
19 Hb_000059_380 0.1095901939 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
20 Hb_001623_270 0.1098169441 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007533_010 Hb_007533_010 Hb_000025_780 Hb_000025_780 Hb_007533_010--Hb_000025_780 Hb_002338_020 Hb_002338_020 Hb_007533_010--Hb_002338_020 Hb_000227_170 Hb_000227_170 Hb_007533_010--Hb_000227_170 Hb_002542_040 Hb_002542_040 Hb_007533_010--Hb_002542_040 Hb_000181_090 Hb_000181_090 Hb_007533_010--Hb_000181_090 Hb_000424_060 Hb_000424_060 Hb_007533_010--Hb_000424_060 Hb_000025_780--Hb_000227_170 Hb_000796_160 Hb_000796_160 Hb_000025_780--Hb_000796_160 Hb_001410_070 Hb_001410_070 Hb_000025_780--Hb_001410_070 Hb_001935_100 Hb_001935_100 Hb_000025_780--Hb_001935_100 Hb_005494_010 Hb_005494_010 Hb_000025_780--Hb_005494_010 Hb_000836_170 Hb_000836_170 Hb_002338_020--Hb_000836_170 Hb_002110_230 Hb_002110_230 Hb_002338_020--Hb_002110_230 Hb_000245_220 Hb_000245_220 Hb_002338_020--Hb_000245_220 Hb_008642_040 Hb_008642_040 Hb_002338_020--Hb_008642_040 Hb_007163_070 Hb_007163_070 Hb_002338_020--Hb_007163_070 Hb_107879_010 Hb_107879_010 Hb_000227_170--Hb_107879_010 Hb_000227_170--Hb_001935_100 Hb_000227_170--Hb_005494_010 Hb_003029_070 Hb_003029_070 Hb_000227_170--Hb_003029_070 Hb_000304_070 Hb_000304_070 Hb_000227_170--Hb_000304_070 Hb_001953_070 Hb_001953_070 Hb_002542_040--Hb_001953_070 Hb_002163_050 Hb_002163_050 Hb_002542_040--Hb_002163_050 Hb_000010_110 Hb_000010_110 Hb_002542_040--Hb_000010_110 Hb_001623_270 Hb_001623_270 Hb_002542_040--Hb_001623_270 Hb_012340_090 Hb_012340_090 Hb_002542_040--Hb_012340_090 Hb_007885_060 Hb_007885_060 Hb_000181_090--Hb_007885_060 Hb_000181_090--Hb_000424_060 Hb_000105_050 Hb_000105_050 Hb_000181_090--Hb_000105_050 Hb_002284_150 Hb_002284_150 Hb_000181_090--Hb_002284_150 Hb_000053_110 Hb_000053_110 Hb_000181_090--Hb_000053_110 Hb_002820_030 Hb_002820_030 Hb_000424_060--Hb_002820_030 Hb_003142_030 Hb_003142_030 Hb_000424_060--Hb_003142_030 Hb_001951_200 Hb_001951_200 Hb_000424_060--Hb_001951_200 Hb_000424_060--Hb_000010_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0151 10.9898 20.7386 6.62357 10.928 9.65547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0361 14.6446 6.59838 8.22365 13.3966

CAGE analysis