Hb_002338_020

Information

Type -
Description -
Location Contig2338: 72959-78686
Sequence    

Annotation

kegg
ID tcc:TCM_015504
description SER/ARG-rich protein 34A
nr
ID XP_012082618.1
description PREDICTED: serine/arginine-rich splicing factor SR34A [Jatropha curcas]
swissprot
ID A2RVS6
description Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana GN=SR34A PE=2 SV=1
trembl
ID A0A067K1P9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19569 PE=4 SV=1
Gene Ontology
ID GO:0005730
description serine arginine-rich splicing factor sr34a-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24544: 72869-78639 , PASA_asmbl_24546: 73860-74331 , PASA_asmbl_24547: 74842-77159
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002338_020 0.0 - - PREDICTED: serine/arginine-rich splicing factor SR34A [Jatropha curcas]
2 Hb_000836_170 0.0755021124 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
3 Hb_002110_230 0.0892593455 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
4 Hb_000245_220 0.0893441145 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
5 Hb_008642_040 0.0907233932 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
6 Hb_007163_070 0.091385436 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
7 Hb_007533_010 0.0915786949 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
8 Hb_004453_130 0.0928391091 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
9 Hb_000731_160 0.0986575817 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]
10 Hb_005697_060 0.098660083 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
11 Hb_004449_170 0.0996154084 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
12 Hb_002820_050 0.0996317539 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
13 Hb_000331_110 0.0997371716 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
14 Hb_009545_080 0.1005148413 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
15 Hb_003942_020 0.1011769692 - - PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
16 Hb_000365_120 0.1017409379 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
17 Hb_012395_230 0.1018094328 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
18 Hb_002477_300 0.1020775063 - - transcription factor, putative [Ricinus communis]
19 Hb_000049_140 0.1033128325 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
20 Hb_000035_500 0.103337348 - - PREDICTED: ADP-ribosylation factor 1 isoform X2 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_002338_020 Hb_002338_020 Hb_000836_170 Hb_000836_170 Hb_002338_020--Hb_000836_170 Hb_002110_230 Hb_002110_230 Hb_002338_020--Hb_002110_230 Hb_000245_220 Hb_000245_220 Hb_002338_020--Hb_000245_220 Hb_008642_040 Hb_008642_040 Hb_002338_020--Hb_008642_040 Hb_007163_070 Hb_007163_070 Hb_002338_020--Hb_007163_070 Hb_007533_010 Hb_007533_010 Hb_002338_020--Hb_007533_010 Hb_005588_030 Hb_005588_030 Hb_000836_170--Hb_005588_030 Hb_000576_050 Hb_000576_050 Hb_000836_170--Hb_000576_050 Hb_001329_130 Hb_001329_130 Hb_000836_170--Hb_001329_130 Hb_000649_070 Hb_000649_070 Hb_000836_170--Hb_000649_070 Hb_000260_100 Hb_000260_100 Hb_000836_170--Hb_000260_100 Hb_001433_070 Hb_001433_070 Hb_002110_230--Hb_001433_070 Hb_005618_050 Hb_005618_050 Hb_002110_230--Hb_005618_050 Hb_000351_120 Hb_000351_120 Hb_002110_230--Hb_000351_120 Hb_002918_030 Hb_002918_030 Hb_002110_230--Hb_002918_030 Hb_063716_100 Hb_063716_100 Hb_002110_230--Hb_063716_100 Hb_001040_100 Hb_001040_100 Hb_002110_230--Hb_001040_100 Hb_000331_110 Hb_000331_110 Hb_000245_220--Hb_000331_110 Hb_000816_250 Hb_000816_250 Hb_000245_220--Hb_000816_250 Hb_162286_010 Hb_162286_010 Hb_000245_220--Hb_162286_010 Hb_011618_050 Hb_011618_050 Hb_000245_220--Hb_011618_050 Hb_000035_500 Hb_000035_500 Hb_000245_220--Hb_000035_500 Hb_001186_090 Hb_001186_090 Hb_000245_220--Hb_001186_090 Hb_003440_060 Hb_003440_060 Hb_008642_040--Hb_003440_060 Hb_012395_230 Hb_012395_230 Hb_008642_040--Hb_012395_230 Hb_008642_040--Hb_000331_110 Hb_008642_040--Hb_001186_090 Hb_000804_040 Hb_000804_040 Hb_008642_040--Hb_000804_040 Hb_004109_280 Hb_004109_280 Hb_008642_040--Hb_004109_280 Hb_005697_060 Hb_005697_060 Hb_007163_070--Hb_005697_060 Hb_001662_150 Hb_001662_150 Hb_007163_070--Hb_001662_150 Hb_000465_090 Hb_000465_090 Hb_007163_070--Hb_000465_090 Hb_028227_020 Hb_028227_020 Hb_007163_070--Hb_028227_020 Hb_003942_020 Hb_003942_020 Hb_007163_070--Hb_003942_020 Hb_002534_150 Hb_002534_150 Hb_007163_070--Hb_002534_150 Hb_000025_780 Hb_000025_780 Hb_007533_010--Hb_000025_780 Hb_000227_170 Hb_000227_170 Hb_007533_010--Hb_000227_170 Hb_002542_040 Hb_002542_040 Hb_007533_010--Hb_002542_040 Hb_000181_090 Hb_000181_090 Hb_007533_010--Hb_000181_090 Hb_000424_060 Hb_000424_060 Hb_007533_010--Hb_000424_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7692 6.14369 14.6584 4.97239 12.8392 10.0619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1677 13.7151 4.82637 9.14951 10.2946

CAGE analysis