Hb_162286_010

Information

Type -
Description -
Location Contig162286: 3153-6627
Sequence    

Annotation

kegg
ID rcu:RCOM_1343450
description NEFA-interacting nuclear protein NIP30, putative
nr
ID XP_012083001.1
description PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K949
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162286_010 0.0 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
2 Hb_000331_110 0.0707729846 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
3 Hb_000245_220 0.0741465174 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
4 Hb_003878_110 0.0778302592 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
5 Hb_007007_060 0.0805069399 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
6 Hb_079526_030 0.0812541944 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
7 Hb_002374_260 0.0852362771 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
8 Hb_002311_310 0.0859192264 - - PREDICTED: uncharacterized protein LOC100246622 [Vitis vinifera]
9 Hb_002684_040 0.0875030922 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
10 Hb_000576_050 0.0886599954 - - Kinase superfamily protein [Theobroma cacao]
11 Hb_027472_120 0.0891246048 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_003638_130 0.0904475792 - - PREDICTED: uncharacterized protein LOC105645779 [Jatropha curcas]
13 Hb_000804_040 0.0909114753 - - protein with unknown function [Ricinus communis]
14 Hb_132840_010 0.0916861534 - - serine/threonine-protein kinase, putative [Ricinus communis]
15 Hb_002022_060 0.0917484137 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
16 Hb_000160_210 0.0926677101 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000917_320 0.0930984097 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
18 Hb_001789_190 0.0931230116 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
19 Hb_000260_100 0.0935078375 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002304_060 0.0936062816 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]

Gene co-expression network

sample Hb_162286_010 Hb_162286_010 Hb_000331_110 Hb_000331_110 Hb_162286_010--Hb_000331_110 Hb_000245_220 Hb_000245_220 Hb_162286_010--Hb_000245_220 Hb_003878_110 Hb_003878_110 Hb_162286_010--Hb_003878_110 Hb_007007_060 Hb_007007_060 Hb_162286_010--Hb_007007_060 Hb_079526_030 Hb_079526_030 Hb_162286_010--Hb_079526_030 Hb_002374_260 Hb_002374_260 Hb_162286_010--Hb_002374_260 Hb_000331_110--Hb_079526_030 Hb_000260_680 Hb_000260_680 Hb_000331_110--Hb_000260_680 Hb_000331_110--Hb_003878_110 Hb_001089_110 Hb_001089_110 Hb_000331_110--Hb_001089_110 Hb_001821_160 Hb_001821_160 Hb_000331_110--Hb_001821_160 Hb_002876_230 Hb_002876_230 Hb_000331_110--Hb_002876_230 Hb_000245_220--Hb_000331_110 Hb_000816_250 Hb_000816_250 Hb_000245_220--Hb_000816_250 Hb_011618_050 Hb_011618_050 Hb_000245_220--Hb_011618_050 Hb_000035_500 Hb_000035_500 Hb_000245_220--Hb_000035_500 Hb_001186_090 Hb_001186_090 Hb_000245_220--Hb_001186_090 Hb_002684_040 Hb_002684_040 Hb_003878_110--Hb_002684_040 Hb_001433_070 Hb_001433_070 Hb_003878_110--Hb_001433_070 Hb_003878_110--Hb_079526_030 Hb_003878_110--Hb_002374_260 Hb_001143_180 Hb_001143_180 Hb_003878_110--Hb_001143_180 Hb_000160_210 Hb_000160_210 Hb_007007_060--Hb_000160_210 Hb_008695_020 Hb_008695_020 Hb_007007_060--Hb_008695_020 Hb_000260_100 Hb_000260_100 Hb_007007_060--Hb_000260_100 Hb_006960_050 Hb_006960_050 Hb_007007_060--Hb_006960_050 Hb_004055_150 Hb_004055_150 Hb_007007_060--Hb_004055_150 Hb_033720_010 Hb_033720_010 Hb_007007_060--Hb_033720_010 Hb_079526_030--Hb_001089_110 Hb_079526_030--Hb_001433_070 Hb_079526_030--Hb_001821_160 Hb_000160_350 Hb_000160_350 Hb_079526_030--Hb_000160_350 Hb_003638_090 Hb_003638_090 Hb_002374_260--Hb_003638_090 Hb_000152_260 Hb_000152_260 Hb_002374_260--Hb_000152_260 Hb_002304_060 Hb_002304_060 Hb_002374_260--Hb_002304_060 Hb_001377_110 Hb_001377_110 Hb_002374_260--Hb_001377_110 Hb_005332_020 Hb_005332_020 Hb_002374_260--Hb_005332_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.86712 1.50999 3.43868 1.38299 2.49673 2.58797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.06505 1.81496 1.39198 2.10173 2.4151

CAGE analysis