Hb_001089_110

Information

Type -
Description -
Location Contig1089: 78759-82408
Sequence    

Annotation

kegg
ID rcu:RCOM_0602140
description hypothetical protein
nr
ID XP_002522327.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q2YDW2
description Protein misato homolog 1 OS=Mus musculus GN=Msto1 PE=2 SV=1
trembl
ID B9S8K8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0602140 PE=4 SV=1
Gene Ontology
ID GO:0005774
description protein misato homolog 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02706: 65500-82407
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001089_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_079526_030 0.0383811324 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
3 Hb_001433_070 0.0525852567 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
4 Hb_005337_090 0.0576195926 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
5 Hb_183612_040 0.0594251364 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
6 Hb_000575_040 0.0630787064 - - PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas]
7 Hb_000331_110 0.063378136 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
8 Hb_000935_010 0.0637377146 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
9 Hb_002652_030 0.0638318074 - - PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Jatropha curcas]
10 Hb_002175_030 0.0640989079 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
11 Hb_006355_010 0.0691397105 - - PREDICTED: protein NLRC3 [Jatropha curcas]
12 Hb_005779_010 0.0698488254 - - catalytic, putative [Ricinus communis]
13 Hb_002684_040 0.0712213622 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
14 Hb_164544_010 0.0719444373 - - PREDICTED: protein arginine N-methyltransferase 1.5 isoform X2 [Jatropha curcas]
15 Hb_002784_020 0.0721239227 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
16 Hb_008453_140 0.0743413241 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
17 Hb_063716_100 0.0751596321 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
18 Hb_008103_070 0.0777361894 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
19 Hb_000160_350 0.0779113372 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
20 Hb_000260_680 0.0781209749 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]

Gene co-expression network

sample Hb_001089_110 Hb_001089_110 Hb_079526_030 Hb_079526_030 Hb_001089_110--Hb_079526_030 Hb_001433_070 Hb_001433_070 Hb_001089_110--Hb_001433_070 Hb_005337_090 Hb_005337_090 Hb_001089_110--Hb_005337_090 Hb_183612_040 Hb_183612_040 Hb_001089_110--Hb_183612_040 Hb_000575_040 Hb_000575_040 Hb_001089_110--Hb_000575_040 Hb_000331_110 Hb_000331_110 Hb_001089_110--Hb_000331_110 Hb_079526_030--Hb_000331_110 Hb_079526_030--Hb_001433_070 Hb_003878_110 Hb_003878_110 Hb_079526_030--Hb_003878_110 Hb_001821_160 Hb_001821_160 Hb_079526_030--Hb_001821_160 Hb_000160_350 Hb_000160_350 Hb_079526_030--Hb_000160_350 Hb_002175_030 Hb_002175_030 Hb_001433_070--Hb_002175_030 Hb_002110_230 Hb_002110_230 Hb_001433_070--Hb_002110_230 Hb_001433_070--Hb_003878_110 Hb_001433_070--Hb_183612_040 Hb_027428_010 Hb_027428_010 Hb_005337_090--Hb_027428_010 Hb_000308_030 Hb_000308_030 Hb_005337_090--Hb_000308_030 Hb_000005_220 Hb_000005_220 Hb_005337_090--Hb_000005_220 Hb_073973_130 Hb_073973_130 Hb_005337_090--Hb_073973_130 Hb_033834_030 Hb_033834_030 Hb_005337_090--Hb_033834_030 Hb_183612_040--Hb_000005_220 Hb_002684_040 Hb_002684_040 Hb_183612_040--Hb_002684_040 Hb_183612_040--Hb_003878_110 Hb_183612_040--Hb_079526_030 Hb_000417_130 Hb_000417_130 Hb_000575_040--Hb_000417_130 Hb_000575_040--Hb_000331_110 Hb_063716_100 Hb_063716_100 Hb_000575_040--Hb_063716_100 Hb_030736_100 Hb_030736_100 Hb_000575_040--Hb_030736_100 Hb_009545_080 Hb_009545_080 Hb_000575_040--Hb_009545_080 Hb_000260_680 Hb_000260_680 Hb_000331_110--Hb_000260_680 Hb_000331_110--Hb_003878_110 Hb_000331_110--Hb_001821_160 Hb_002876_230 Hb_002876_230 Hb_000331_110--Hb_002876_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1976 9.92258 12.4572 6.36975 12.3091 13.7561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.27616 11.5469 7.1232 11.7835 7.29615

CAGE analysis