Hb_000260_680

Information

Type -
Description -
Location Contig260: 516431-523722
Sequence    

Annotation

kegg
ID pmum:103333515
description serine/threonine-protein phosphatase 4 regulatory subunit 2-A
nr
ID XP_012090927.1
description PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
swissprot
ID Q6P964
description Serine/threonine-protein phosphatase 4 regulatory subunit 2-A OS=Danio rerio GN=ppp4r2a PE=2 SV=2
trembl
ID A0A067JG90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00575 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27048: 516566-522985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_680 0.0 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
2 Hb_001776_060 0.0564902442 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
3 Hb_000331_110 0.0615222492 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
4 Hb_002217_110 0.0617552829 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
5 Hb_079526_030 0.0664006428 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
6 Hb_001153_210 0.0666002128 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
7 Hb_005779_010 0.0673555516 - - catalytic, putative [Ricinus communis]
8 Hb_012384_030 0.0676293201 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Jatropha curcas]
9 Hb_002067_030 0.0685253027 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
10 Hb_004994_010 0.0686044546 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
11 Hb_003579_050 0.0695891137 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
12 Hb_001751_140 0.0707067829 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
13 Hb_001821_160 0.0714024721 - - serine/arginine rich splicing factor, putative [Ricinus communis]
14 Hb_008568_020 0.0715336348 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
15 Hb_001186_090 0.0722129051 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
16 Hb_154580_010 0.0734059975 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
17 Hb_003927_040 0.0739743248 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
18 Hb_013394_030 0.0742737843 - - PREDICTED: exocyst complex component SEC6 [Vitis vinifera]
19 Hb_001456_060 0.0743165203 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
20 Hb_000866_310 0.0744136459 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]

Gene co-expression network

sample Hb_000260_680 Hb_000260_680 Hb_001776_060 Hb_001776_060 Hb_000260_680--Hb_001776_060 Hb_000331_110 Hb_000331_110 Hb_000260_680--Hb_000331_110 Hb_002217_110 Hb_002217_110 Hb_000260_680--Hb_002217_110 Hb_079526_030 Hb_079526_030 Hb_000260_680--Hb_079526_030 Hb_001153_210 Hb_001153_210 Hb_000260_680--Hb_001153_210 Hb_005779_010 Hb_005779_010 Hb_000260_680--Hb_005779_010 Hb_012384_030 Hb_012384_030 Hb_001776_060--Hb_012384_030 Hb_000144_070 Hb_000144_070 Hb_001776_060--Hb_000144_070 Hb_032202_080 Hb_032202_080 Hb_001776_060--Hb_032202_080 Hb_001776_060--Hb_002217_110 Hb_007290_030 Hb_007290_030 Hb_001776_060--Hb_007290_030 Hb_000331_110--Hb_079526_030 Hb_003878_110 Hb_003878_110 Hb_000331_110--Hb_003878_110 Hb_001089_110 Hb_001089_110 Hb_000331_110--Hb_001089_110 Hb_001821_160 Hb_001821_160 Hb_000331_110--Hb_001821_160 Hb_002876_230 Hb_002876_230 Hb_000331_110--Hb_002876_230 Hb_004837_180 Hb_004837_180 Hb_002217_110--Hb_004837_180 Hb_001456_060 Hb_001456_060 Hb_002217_110--Hb_001456_060 Hb_002217_110--Hb_012384_030 Hb_003929_280 Hb_003929_280 Hb_002217_110--Hb_003929_280 Hb_079526_030--Hb_001089_110 Hb_001433_070 Hb_001433_070 Hb_079526_030--Hb_001433_070 Hb_079526_030--Hb_003878_110 Hb_079526_030--Hb_001821_160 Hb_000160_350 Hb_000160_350 Hb_079526_030--Hb_000160_350 Hb_138435_010 Hb_138435_010 Hb_001153_210--Hb_138435_010 Hb_002986_100 Hb_002986_100 Hb_001153_210--Hb_002986_100 Hb_005867_070 Hb_005867_070 Hb_001153_210--Hb_005867_070 Hb_003861_050 Hb_003861_050 Hb_001153_210--Hb_003861_050 Hb_004020_040 Hb_004020_040 Hb_001153_210--Hb_004020_040 Hb_000339_040 Hb_000339_040 Hb_001153_210--Hb_000339_040 Hb_004994_010 Hb_004994_010 Hb_005779_010--Hb_004994_010 Hb_002445_100 Hb_002445_100 Hb_005779_010--Hb_002445_100 Hb_000163_220 Hb_000163_220 Hb_005779_010--Hb_000163_220 Hb_000816_250 Hb_000816_250 Hb_005779_010--Hb_000816_250 Hb_005779_010--Hb_003861_050 Hb_000005_220 Hb_000005_220 Hb_005779_010--Hb_000005_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7256 13.359 20.3529 10.2438 14.4309 14.1246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.04908 14.2852 6.8311 10.673 9.99731

CAGE analysis