Hb_000144_070

Information

Type -
Description -
Location Contig144: 189408-194217
Sequence    

Annotation

kegg
ID rcu:RCOM_0517120
description hypothetical protein
nr
ID XP_002528749.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRY0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0517120 PE=4 SV=1
Gene Ontology
ID GO:0005622
description syntaxin t-snare family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11622: 189257-191830 , PASA_asmbl_11624: 192370-193925 , PASA_asmbl_11625: 194067-194323 , PASA_asmbl_11626: 194918-197084 , PASA_asmbl_11627: 194918-196972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000144_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001776_060 0.0584197774 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
3 Hb_013394_030 0.0705185372 - - PREDICTED: exocyst complex component SEC6 [Vitis vinifera]
4 Hb_000339_040 0.0769031977 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
5 Hb_000789_320 0.0772840931 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
6 Hb_012384_030 0.0777717761 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Jatropha curcas]
7 Hb_000352_350 0.0788840026 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
8 Hb_010931_070 0.0791884628 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
9 Hb_007290_030 0.0807896549 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
10 Hb_000260_680 0.0818554945 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
11 Hb_004052_080 0.0823199062 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000757_030 0.0841265863 - - radical sam protein, putative [Ricinus communis]
13 Hb_006615_050 0.0842074306 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
14 Hb_000239_060 0.0857737719 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005144_090 0.086051884 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
16 Hb_001456_060 0.0864109519 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
17 Hb_001761_120 0.0866475741 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
18 Hb_001953_070 0.0870530123 - - PREDICTED: RNA pseudouridine synthase 7 isoform X2 [Jatropha curcas]
19 Hb_000254_100 0.0871015695 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
20 Hb_043792_010 0.0874062165 - - PREDICTED: uncharacterized protein LOC105645113 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000144_070 Hb_000144_070 Hb_001776_060 Hb_001776_060 Hb_000144_070--Hb_001776_060 Hb_013394_030 Hb_013394_030 Hb_000144_070--Hb_013394_030 Hb_000339_040 Hb_000339_040 Hb_000144_070--Hb_000339_040 Hb_000789_320 Hb_000789_320 Hb_000144_070--Hb_000789_320 Hb_012384_030 Hb_012384_030 Hb_000144_070--Hb_012384_030 Hb_000352_350 Hb_000352_350 Hb_000144_070--Hb_000352_350 Hb_001776_060--Hb_012384_030 Hb_000260_680 Hb_000260_680 Hb_001776_060--Hb_000260_680 Hb_032202_080 Hb_032202_080 Hb_001776_060--Hb_032202_080 Hb_002217_110 Hb_002217_110 Hb_001776_060--Hb_002217_110 Hb_007290_030 Hb_007290_030 Hb_001776_060--Hb_007290_030 Hb_002067_030 Hb_002067_030 Hb_013394_030--Hb_002067_030 Hb_128548_010 Hb_128548_010 Hb_013394_030--Hb_128548_010 Hb_004994_010 Hb_004994_010 Hb_013394_030--Hb_004994_010 Hb_010407_050 Hb_010407_050 Hb_013394_030--Hb_010407_050 Hb_008568_020 Hb_008568_020 Hb_013394_030--Hb_008568_020 Hb_004052_080 Hb_004052_080 Hb_000339_040--Hb_004052_080 Hb_001456_060 Hb_001456_060 Hb_000339_040--Hb_001456_060 Hb_002876_230 Hb_002876_230 Hb_000339_040--Hb_002876_230 Hb_009911_030 Hb_009911_030 Hb_000339_040--Hb_009911_030 Hb_004837_180 Hb_004837_180 Hb_000339_040--Hb_004837_180 Hb_005867_070 Hb_005867_070 Hb_000339_040--Hb_005867_070 Hb_171900_090 Hb_171900_090 Hb_000789_320--Hb_171900_090 Hb_000789_320--Hb_000339_040 Hb_001623_270 Hb_001623_270 Hb_000789_320--Hb_001623_270 Hb_001025_090 Hb_001025_090 Hb_000789_320--Hb_001025_090 Hb_000866_310 Hb_000866_310 Hb_000789_320--Hb_000866_310 Hb_001153_210 Hb_001153_210 Hb_000789_320--Hb_001153_210 Hb_000402_120 Hb_000402_120 Hb_012384_030--Hb_000402_120 Hb_000866_410 Hb_000866_410 Hb_012384_030--Hb_000866_410 Hb_003929_280 Hb_003929_280 Hb_012384_030--Hb_003929_280 Hb_012384_030--Hb_002217_110 Hb_003927_040 Hb_003927_040 Hb_012384_030--Hb_003927_040 Hb_000352_350--Hb_007290_030 Hb_000239_060 Hb_000239_060 Hb_000352_350--Hb_000239_060 Hb_000227_270 Hb_000227_270 Hb_000352_350--Hb_000227_270 Hb_001005_020 Hb_001005_020 Hb_000352_350--Hb_001005_020 Hb_000089_210 Hb_000089_210 Hb_000352_350--Hb_000089_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.19073 5.75625 11.3693 6.12165 6.35898 4.54318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.94297 6.67556 4.94055 5.14164 5.86445

CAGE analysis