Hb_000402_120

Information

Type -
Description -
Location Contig402: 127175-135001
Sequence    

Annotation

kegg
ID rcu:RCOM_1176950
description ATP binding protein, putative
nr
ID XP_012072929.1
description PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KME4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06895 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39925: 129654-134455 , PASA_asmbl_39927: 133177-134010
cDNA
(Sanger)
(ID:Location)		 030_G23.ab1: 133595-134455

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000402_120 0.0 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
2 Hb_012384_030 0.0476716506 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Jatropha curcas]
3 Hb_032264_060 0.0724694681 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
4 Hb_001776_060 0.0743333437 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
5 Hb_001636_050 0.0754501518 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
6 Hb_013394_030 0.0796430211 - - PREDICTED: exocyst complex component SEC6 [Vitis vinifera]
7 Hb_032202_080 0.0811240597 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
8 Hb_008695_110 0.0815864394 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
9 Hb_008887_020 0.0821430439 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
10 Hb_003929_280 0.0824965514 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
11 Hb_003292_050 0.0830731663 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
12 Hb_003927_040 0.0849403463 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
13 Hb_000390_230 0.0851350895 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
14 Hb_000115_280 0.0853629157 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
15 Hb_027073_030 0.0857540691 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
16 Hb_002027_060 0.0871044204 - - PREDICTED: exosome complex component RRP4 [Jatropha curcas]
17 Hb_000836_410 0.087223358 - - sec10, putative [Ricinus communis]
18 Hb_000260_680 0.0873837903 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
19 Hb_053079_020 0.0884562649 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
20 Hb_022256_060 0.0885719734 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]

Gene co-expression network

sample Hb_000402_120 Hb_000402_120 Hb_012384_030 Hb_012384_030 Hb_000402_120--Hb_012384_030 Hb_032264_060 Hb_032264_060 Hb_000402_120--Hb_032264_060 Hb_001776_060 Hb_001776_060 Hb_000402_120--Hb_001776_060 Hb_001636_050 Hb_001636_050 Hb_000402_120--Hb_001636_050 Hb_013394_030 Hb_013394_030 Hb_000402_120--Hb_013394_030 Hb_032202_080 Hb_032202_080 Hb_000402_120--Hb_032202_080 Hb_012384_030--Hb_001776_060 Hb_000866_410 Hb_000866_410 Hb_012384_030--Hb_000866_410 Hb_003929_280 Hb_003929_280 Hb_012384_030--Hb_003929_280 Hb_002217_110 Hb_002217_110 Hb_012384_030--Hb_002217_110 Hb_003927_040 Hb_003927_040 Hb_012384_030--Hb_003927_040 Hb_000803_070 Hb_000803_070 Hb_032264_060--Hb_000803_070 Hb_003633_070 Hb_003633_070 Hb_032264_060--Hb_003633_070 Hb_032264_060--Hb_003927_040 Hb_001140_030 Hb_001140_030 Hb_032264_060--Hb_001140_030 Hb_001751_140 Hb_001751_140 Hb_032264_060--Hb_001751_140 Hb_001754_030 Hb_001754_030 Hb_032264_060--Hb_001754_030 Hb_000260_680 Hb_000260_680 Hb_001776_060--Hb_000260_680 Hb_000144_070 Hb_000144_070 Hb_001776_060--Hb_000144_070 Hb_001776_060--Hb_032202_080 Hb_001776_060--Hb_002217_110 Hb_007290_030 Hb_007290_030 Hb_001776_060--Hb_007290_030 Hb_007044_110 Hb_007044_110 Hb_001636_050--Hb_007044_110 Hb_002067_030 Hb_002067_030 Hb_001636_050--Hb_002067_030 Hb_004976_010 Hb_004976_010 Hb_001636_050--Hb_004976_010 Hb_000645_170 Hb_000645_170 Hb_001636_050--Hb_000645_170 Hb_000236_470 Hb_000236_470 Hb_001636_050--Hb_000236_470 Hb_055235_020 Hb_055235_020 Hb_001636_050--Hb_055235_020 Hb_013394_030--Hb_002067_030 Hb_128548_010 Hb_128548_010 Hb_013394_030--Hb_128548_010 Hb_013394_030--Hb_000144_070 Hb_004994_010 Hb_004994_010 Hb_013394_030--Hb_004994_010 Hb_010407_050 Hb_010407_050 Hb_013394_030--Hb_010407_050 Hb_008568_020 Hb_008568_020 Hb_013394_030--Hb_008568_020 Hb_000457_230 Hb_000457_230 Hb_032202_080--Hb_000457_230 Hb_002615_120 Hb_002615_120 Hb_032202_080--Hb_002615_120 Hb_138435_010 Hb_138435_010 Hb_032202_080--Hb_138435_010 Hb_032202_080--Hb_008568_020 Hb_001405_190 Hb_001405_190 Hb_032202_080--Hb_001405_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8456 11.1925 14.0131 5.2525 11.2059 9.19365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.73665 8.09996 6.98604 6.75021 9.65799

CAGE analysis