Hb_007290_030

Information

Type transcription factor
Description TF Family: bZIP
Location Contig7290: 54101-58434
Sequence    

Annotation

kegg
ID rcu:RCOM_0331400
description DNA binding protein, putative
nr
ID XP_012066463.1
description PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
swissprot
ID P23922
description Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1
trembl
ID A0A067L6B0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23658 PE=4 SV=1
Gene Ontology
ID GO:0003700
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55890: 54133-58306 , PASA_asmbl_55891: 55674-58306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007290_030 0.0 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
2 Hb_000352_350 0.0658440301 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
3 Hb_001761_120 0.0700913961 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
4 Hb_001776_060 0.0716527085 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
5 Hb_000227_270 0.0716734173 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
6 Hb_000239_060 0.0747628253 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001635_040 0.0771378516 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
8 Hb_032202_080 0.0779012506 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
9 Hb_003531_080 0.0780069422 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
10 Hb_170416_010 0.0785094874 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
11 Hb_138435_010 0.0788366603 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
12 Hb_000340_420 0.0794925876 - - PREDICTED: LEC14B protein isoform X2 [Jatropha curcas]
13 Hb_001005_020 0.0796787313 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
14 Hb_000086_500 0.0803113673 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
15 Hb_000238_040 0.0805752495 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
16 Hb_000144_070 0.0807896549 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000339_040 0.0830424903 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
18 Hb_002326_110 0.0830828329 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
19 Hb_001751_140 0.0833780027 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
20 Hb_000139_190 0.0847875855 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007290_030 Hb_007290_030 Hb_000352_350 Hb_000352_350 Hb_007290_030--Hb_000352_350 Hb_001761_120 Hb_001761_120 Hb_007290_030--Hb_001761_120 Hb_001776_060 Hb_001776_060 Hb_007290_030--Hb_001776_060 Hb_000227_270 Hb_000227_270 Hb_007290_030--Hb_000227_270 Hb_000239_060 Hb_000239_060 Hb_007290_030--Hb_000239_060 Hb_001635_040 Hb_001635_040 Hb_007290_030--Hb_001635_040 Hb_000352_350--Hb_000239_060 Hb_000352_350--Hb_000227_270 Hb_001005_020 Hb_001005_020 Hb_000352_350--Hb_001005_020 Hb_000144_070 Hb_000144_070 Hb_000352_350--Hb_000144_070 Hb_000089_210 Hb_000089_210 Hb_000352_350--Hb_000089_210 Hb_170416_010 Hb_170416_010 Hb_001761_120--Hb_170416_010 Hb_003531_080 Hb_003531_080 Hb_001761_120--Hb_003531_080 Hb_004052_080 Hb_004052_080 Hb_001761_120--Hb_004052_080 Hb_000339_040 Hb_000339_040 Hb_001761_120--Hb_000339_040 Hb_000103_340 Hb_000103_340 Hb_001761_120--Hb_000103_340 Hb_012384_030 Hb_012384_030 Hb_001776_060--Hb_012384_030 Hb_000260_680 Hb_000260_680 Hb_001776_060--Hb_000260_680 Hb_001776_060--Hb_000144_070 Hb_032202_080 Hb_032202_080 Hb_001776_060--Hb_032202_080 Hb_002217_110 Hb_002217_110 Hb_001776_060--Hb_002217_110 Hb_017214_040 Hb_017214_040 Hb_000227_270--Hb_017214_040 Hb_023226_070 Hb_023226_070 Hb_000227_270--Hb_023226_070 Hb_004943_030 Hb_004943_030 Hb_000227_270--Hb_004943_030 Hb_000086_500 Hb_000086_500 Hb_000227_270--Hb_000086_500 Hb_007441_020 Hb_007441_020 Hb_000239_060--Hb_007441_020 Hb_001751_140 Hb_001751_140 Hb_000239_060--Hb_001751_140 Hb_000239_060--Hb_001776_060 Hb_006588_070 Hb_006588_070 Hb_000239_060--Hb_006588_070 Hb_001635_040--Hb_001751_140 Hb_000162_030 Hb_000162_030 Hb_001635_040--Hb_000162_030 Hb_008568_020 Hb_008568_020 Hb_001635_040--Hb_008568_020 Hb_001005_030 Hb_001005_030 Hb_001635_040--Hb_001005_030 Hb_000777_050 Hb_000777_050 Hb_001635_040--Hb_000777_050 Hb_138596_010 Hb_138596_010 Hb_001635_040--Hb_138596_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8437 9.76722 16.0451 8.38367 7.68489 7.98291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.28817 5.79934 7.30677 5.7604 7.42609

CAGE analysis