Hb_000086_500

Information

Type transcription factor
Description TF Family: G2-like
Location Contig86: 393115-407144
Sequence    

Annotation

kegg
ID rcu:RCOM_0542940
description transcription factor, putative
nr
ID XP_002526559.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q8GUN5
description Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1
trembl
ID B9SKP0
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0542940 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein phr1-like 1 isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60761: 393120-397158 , PASA_asmbl_60762: 397244-407144
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_500 0.0 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
2 Hb_008062_050 0.0611205783 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
3 Hb_128548_010 0.0676323044 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002483_010 0.0683180253 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
5 Hb_008568_020 0.0724352862 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
6 Hb_001584_350 0.0748403537 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
7 Hb_000645_170 0.0760445075 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000787_150 0.0779604722 - - PREDICTED: protein NDR1-like [Jatropha curcas]
9 Hb_001252_230 0.0782790416 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
10 Hb_001430_080 0.0788622182 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
11 Hb_143766_110 0.0793442935 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
12 Hb_000162_030 0.0793960116 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
13 Hb_000238_040 0.0796289391 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
14 Hb_007290_030 0.0803113673 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
15 Hb_060094_020 0.0803262033 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
16 Hb_000227_270 0.081824186 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
17 Hb_001147_110 0.0830298723 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
18 Hb_002805_190 0.0854438694 - - spliceosome associated protein, putative [Ricinus communis]
19 Hb_001754_030 0.0856837223 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
20 Hb_001153_190 0.0859268197 - - PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_500 Hb_000086_500 Hb_008062_050 Hb_008062_050 Hb_000086_500--Hb_008062_050 Hb_128548_010 Hb_128548_010 Hb_000086_500--Hb_128548_010 Hb_002483_010 Hb_002483_010 Hb_000086_500--Hb_002483_010 Hb_008568_020 Hb_008568_020 Hb_000086_500--Hb_008568_020 Hb_001584_350 Hb_001584_350 Hb_000086_500--Hb_001584_350 Hb_000645_170 Hb_000645_170 Hb_000086_500--Hb_000645_170 Hb_001147_110 Hb_001147_110 Hb_008062_050--Hb_001147_110 Hb_000162_030 Hb_000162_030 Hb_008062_050--Hb_000162_030 Hb_143766_110 Hb_143766_110 Hb_008062_050--Hb_143766_110 Hb_008062_050--Hb_128548_010 Hb_001268_280 Hb_001268_280 Hb_008062_050--Hb_001268_280 Hb_000523_080 Hb_000523_080 Hb_128548_010--Hb_000523_080 Hb_001430_080 Hb_001430_080 Hb_128548_010--Hb_001430_080 Hb_001723_140 Hb_001723_140 Hb_128548_010--Hb_001723_140 Hb_128548_010--Hb_008568_020 Hb_003943_020 Hb_003943_020 Hb_128548_010--Hb_003943_020 Hb_128548_010--Hb_001584_350 Hb_002483_010--Hb_008062_050 Hb_000787_150 Hb_000787_150 Hb_002483_010--Hb_000787_150 Hb_000023_320 Hb_000023_320 Hb_002483_010--Hb_000023_320 Hb_000926_010 Hb_000926_010 Hb_002483_010--Hb_000926_010 Hb_002483_010--Hb_143766_110 Hb_003096_060 Hb_003096_060 Hb_008568_020--Hb_003096_060 Hb_001635_040 Hb_001635_040 Hb_008568_020--Hb_001635_040 Hb_154580_010 Hb_154580_010 Hb_008568_020--Hb_154580_010 Hb_000836_410 Hb_000836_410 Hb_008568_020--Hb_000836_410 Hb_008568_020--Hb_000645_170 Hb_002615_120 Hb_002615_120 Hb_008568_020--Hb_002615_120 Hb_001584_350--Hb_001723_140 Hb_000529_060 Hb_000529_060 Hb_001584_350--Hb_000529_060 Hb_001171_030 Hb_001171_030 Hb_001584_350--Hb_001171_030 Hb_000174_150 Hb_000174_150 Hb_001584_350--Hb_000174_150 Hb_000977_300 Hb_000977_300 Hb_001584_350--Hb_000977_300 Hb_003927_040 Hb_003927_040 Hb_000645_170--Hb_003927_040 Hb_000645_170--Hb_001430_080 Hb_004236_050 Hb_004236_050 Hb_000645_170--Hb_004236_050 Hb_001636_050 Hb_001636_050 Hb_000645_170--Hb_001636_050 Hb_000645_170--Hb_154580_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2399 18.3678 20.3785 9.95091 9.97512 12.5997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6516 6.43267 7.86997 12.1269 10.3223

CAGE analysis