Hb_008062_050

Information

Type -
Description -
Location Contig8062: 21010-23049
Sequence    

Annotation

kegg
ID rcu:RCOM_0885510
description dnajc14 protein, putative
nr
ID XP_012069195.1
description PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
swissprot
ID O13633
description Uncharacterized J domain-containing protein C17A3.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pi041 PE=1 SV=1
trembl
ID A0A067L906
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24984 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59051: 20988-23084
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008062_050 0.0 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
2 Hb_000086_500 0.0611205783 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
3 Hb_001147_110 0.0666290534 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
4 Hb_000162_030 0.0756619739 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
5 Hb_143766_110 0.0759827221 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
6 Hb_128548_010 0.0770013111 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001268_280 0.0776023904 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000027_050 0.0807255224 - - PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]
9 Hb_001047_200 0.0818901115 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
10 Hb_005542_050 0.0836734752 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
11 Hb_002805_190 0.0844285352 - - spliceosome associated protein, putative [Ricinus communis]
12 Hb_001723_140 0.0853598431 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
13 Hb_010417_070 0.0859407382 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
14 Hb_000879_040 0.0864221826 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
15 Hb_001767_140 0.0865915051 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
16 Hb_001153_190 0.0867213379 - - PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
17 Hb_000786_040 0.088531397 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]
18 Hb_000418_140 0.0888363746 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
19 Hb_001430_080 0.0896128468 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
20 Hb_008253_030 0.0896617511 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]

Gene co-expression network

sample Hb_008062_050 Hb_008062_050 Hb_000086_500 Hb_000086_500 Hb_008062_050--Hb_000086_500 Hb_001147_110 Hb_001147_110 Hb_008062_050--Hb_001147_110 Hb_000162_030 Hb_000162_030 Hb_008062_050--Hb_000162_030 Hb_143766_110 Hb_143766_110 Hb_008062_050--Hb_143766_110 Hb_128548_010 Hb_128548_010 Hb_008062_050--Hb_128548_010 Hb_001268_280 Hb_001268_280 Hb_008062_050--Hb_001268_280 Hb_000086_500--Hb_128548_010 Hb_002483_010 Hb_002483_010 Hb_000086_500--Hb_002483_010 Hb_008568_020 Hb_008568_020 Hb_000086_500--Hb_008568_020 Hb_001584_350 Hb_001584_350 Hb_000086_500--Hb_001584_350 Hb_000645_170 Hb_000645_170 Hb_000086_500--Hb_000645_170 Hb_001147_110--Hb_000162_030 Hb_008253_030 Hb_008253_030 Hb_001147_110--Hb_008253_030 Hb_002276_240 Hb_002276_240 Hb_001147_110--Hb_002276_240 Hb_001767_140 Hb_001767_140 Hb_001147_110--Hb_001767_140 Hb_184798_080 Hb_184798_080 Hb_001147_110--Hb_184798_080 Hb_002325_040 Hb_002325_040 Hb_001147_110--Hb_002325_040 Hb_001635_040 Hb_001635_040 Hb_000162_030--Hb_001635_040 Hb_000162_030--Hb_001268_280 Hb_000162_030--Hb_008568_020 Hb_004357_020 Hb_004357_020 Hb_000162_030--Hb_004357_020 Hb_000162_030--Hb_002276_240 Hb_001405_190 Hb_001405_190 Hb_143766_110--Hb_001405_190 Hb_143766_110--Hb_000162_030 Hb_000260_440 Hb_000260_440 Hb_143766_110--Hb_000260_440 Hb_000264_070 Hb_000264_070 Hb_143766_110--Hb_000264_070 Hb_010362_030 Hb_010362_030 Hb_143766_110--Hb_010362_030 Hb_007929_080 Hb_007929_080 Hb_143766_110--Hb_007929_080 Hb_000523_080 Hb_000523_080 Hb_128548_010--Hb_000523_080 Hb_001430_080 Hb_001430_080 Hb_128548_010--Hb_001430_080 Hb_001723_140 Hb_001723_140 Hb_128548_010--Hb_001723_140 Hb_128548_010--Hb_008568_020 Hb_003943_020 Hb_003943_020 Hb_128548_010--Hb_003943_020 Hb_128548_010--Hb_001584_350 Hb_000914_120 Hb_000914_120 Hb_001268_280--Hb_000914_120 Hb_002267_140 Hb_002267_140 Hb_001268_280--Hb_002267_140 Hb_001318_070 Hb_001318_070 Hb_001268_280--Hb_001318_070 Hb_002732_040 Hb_002732_040 Hb_001268_280--Hb_002732_040 Hb_000243_210 Hb_000243_210 Hb_001268_280--Hb_000243_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2548 19.4498 16.7156 9.05153 12.1091 14.5734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2379 4.38195 8.79389 13.5519 11.6883

CAGE analysis