Hb_003943_020

Information

Type -
Description -
Location Contig3943: 27651-37588
Sequence    

Annotation

kegg
ID rcu:RCOM_0980140
description fk506 binding protein, putative (EC:5.2.1.8)
nr
ID XP_012073314.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
swissprot
ID Q7DMA9
description Peptidyl-prolyl cis-trans isomerase PASTICCINO1 OS=Arabidopsis thaliana GN=PAS1 PE=1 SV=2
trembl
ID A0A067KZD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06250 PE=4 SV=1
Gene Ontology
ID GO:0005515
description peptidyl-prolyl cis-trans isomerase pasticcino1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39474: 27660-37495
cDNA
(Sanger)
(ID:Location)		 009_B14.ab1: 36915-37570 , 012_C12.ab1: 36913-37570

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003943_020 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
2 Hb_000523_080 0.0460042887 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
3 Hb_000318_120 0.062920331 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
4 Hb_128548_010 0.0652288746 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005333_160 0.0675597704 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
6 Hb_013358_070 0.0675966655 - - protein with unknown function [Ricinus communis]
7 Hb_001723_140 0.0679133259 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
8 Hb_000236_470 0.0737387835 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
9 Hb_007044_110 0.0740335647 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_000398_080 0.0758292305 - - tip120, putative [Ricinus communis]
11 Hb_000823_030 0.0761466256 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
12 Hb_004096_190 0.0762048884 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
13 Hb_000377_050 0.077220485 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
14 Hb_088144_020 0.0772225594 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
15 Hb_055235_020 0.0782110267 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
16 Hb_001430_080 0.079202685 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
17 Hb_001047_200 0.0794871369 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
18 Hb_004976_010 0.0803703969 - - hypothetical protein RCOM_1429110 [Ricinus communis]
19 Hb_000879_040 0.0805429782 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
20 Hb_000134_270 0.0813951426 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]

Gene co-expression network

sample Hb_003943_020 Hb_003943_020 Hb_000523_080 Hb_000523_080 Hb_003943_020--Hb_000523_080 Hb_000318_120 Hb_000318_120 Hb_003943_020--Hb_000318_120 Hb_128548_010 Hb_128548_010 Hb_003943_020--Hb_128548_010 Hb_005333_160 Hb_005333_160 Hb_003943_020--Hb_005333_160 Hb_013358_070 Hb_013358_070 Hb_003943_020--Hb_013358_070 Hb_001723_140 Hb_001723_140 Hb_003943_020--Hb_001723_140 Hb_000523_080--Hb_128548_010 Hb_007929_080 Hb_007929_080 Hb_000523_080--Hb_007929_080 Hb_009771_110 Hb_009771_110 Hb_000523_080--Hb_009771_110 Hb_000523_080--Hb_001723_140 Hb_000523_080--Hb_013358_070 Hb_055235_020 Hb_055235_020 Hb_000318_120--Hb_055235_020 Hb_000134_270 Hb_000134_270 Hb_000318_120--Hb_000134_270 Hb_000318_120--Hb_000523_080 Hb_007044_110 Hb_007044_110 Hb_000318_120--Hb_007044_110 Hb_000563_420 Hb_000563_420 Hb_000318_120--Hb_000563_420 Hb_001430_080 Hb_001430_080 Hb_128548_010--Hb_001430_080 Hb_128548_010--Hb_001723_140 Hb_008568_020 Hb_008568_020 Hb_128548_010--Hb_008568_020 Hb_001584_350 Hb_001584_350 Hb_128548_010--Hb_001584_350 Hb_171900_070 Hb_171900_070 Hb_005333_160--Hb_171900_070 Hb_000086_560 Hb_000086_560 Hb_005333_160--Hb_000086_560 Hb_000359_120 Hb_000359_120 Hb_005333_160--Hb_000359_120 Hb_005333_160--Hb_000523_080 Hb_011689_060 Hb_011689_060 Hb_005333_160--Hb_011689_060 Hb_013358_070--Hb_001723_140 Hb_000175_410 Hb_000175_410 Hb_013358_070--Hb_000175_410 Hb_013358_070--Hb_009771_110 Hb_013358_070--Hb_000318_120 Hb_001171_030 Hb_001171_030 Hb_001723_140--Hb_001171_030 Hb_001723_140--Hb_001584_350 Hb_003142_040 Hb_003142_040 Hb_001723_140--Hb_003142_040 Hb_000027_050 Hb_000027_050 Hb_001723_140--Hb_000027_050 Hb_000529_060 Hb_000529_060 Hb_001723_140--Hb_000529_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4947 17.3795 15.6878 9.53162 15.9482 13.0484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.70326 6.82713 5.04653 18.0926 14.874

CAGE analysis