Hb_171900_070

Information

Type -
Description -
Location Contig171900: 23158-23812
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16102: 24669-26127 , PASA_asmbl_16105: 21540-35910 , PASA_asmbl_16106: 23209-23633
cDNA
(Sanger)
(ID:Location)		 020_H02.ab1: 21540-35910

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171900_070 0.0 - - -
2 Hb_005333_160 0.066251096 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
3 Hb_000359_120 0.0802759851 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005289_040 0.0813651686 - - poly(A) polymerase, putative [Ricinus communis]
5 Hb_000086_560 0.0816559933 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
6 Hb_032202_120 0.0843556628 - - PREDICTED: uncharacterized protein LOC105643059 isoform X2 [Jatropha curcas]
7 Hb_011689_060 0.0848346932 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
8 Hb_000603_030 0.0881202297 - - Ribonuclease III, putative [Ricinus communis]
9 Hb_003943_020 0.0902699041 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
10 Hb_002631_170 0.0911819271 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
11 Hb_001433_070 0.0916170403 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
12 Hb_002374_260 0.0918117115 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
13 Hb_028872_070 0.0922175768 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
14 Hb_004096_190 0.0924893028 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
15 Hb_002311_290 0.0938951232 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
16 Hb_002890_120 0.0941792652 - - Nucleic acid binding,RNA binding isoform 1 [Theobroma cacao]
17 Hb_000089_120 0.0942451824 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_005588_090 0.0950310823 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
19 Hb_001235_140 0.0963372815 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
20 Hb_000134_270 0.097140769 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]

Gene co-expression network

sample Hb_171900_070 Hb_171900_070 Hb_005333_160 Hb_005333_160 Hb_171900_070--Hb_005333_160 Hb_000359_120 Hb_000359_120 Hb_171900_070--Hb_000359_120 Hb_005289_040 Hb_005289_040 Hb_171900_070--Hb_005289_040 Hb_000086_560 Hb_000086_560 Hb_171900_070--Hb_000086_560 Hb_032202_120 Hb_032202_120 Hb_171900_070--Hb_032202_120 Hb_011689_060 Hb_011689_060 Hb_171900_070--Hb_011689_060 Hb_003943_020 Hb_003943_020 Hb_005333_160--Hb_003943_020 Hb_005333_160--Hb_000086_560 Hb_005333_160--Hb_000359_120 Hb_000523_080 Hb_000523_080 Hb_005333_160--Hb_000523_080 Hb_005333_160--Hb_011689_060 Hb_000270_460 Hb_000270_460 Hb_000359_120--Hb_000270_460 Hb_001953_150 Hb_001953_150 Hb_000359_120--Hb_001953_150 Hb_006658_040 Hb_006658_040 Hb_000359_120--Hb_006658_040 Hb_000359_120--Hb_000086_560 Hb_003638_090 Hb_003638_090 Hb_005289_040--Hb_003638_090 Hb_005588_090 Hb_005588_090 Hb_005289_040--Hb_005588_090 Hb_000398_080 Hb_000398_080 Hb_005289_040--Hb_000398_080 Hb_002805_190 Hb_002805_190 Hb_005289_040--Hb_002805_190 Hb_000134_270 Hb_000134_270 Hb_005289_040--Hb_000134_270 Hb_154580_010 Hb_154580_010 Hb_005289_040--Hb_154580_010 Hb_011930_080 Hb_011930_080 Hb_000086_560--Hb_011930_080 Hb_001427_190 Hb_001427_190 Hb_000086_560--Hb_001427_190 Hb_005053_010 Hb_005053_010 Hb_000086_560--Hb_005053_010 Hb_002374_260 Hb_002374_260 Hb_000086_560--Hb_002374_260 Hb_008103_070 Hb_008103_070 Hb_032202_120--Hb_008103_070 Hb_001433_070 Hb_001433_070 Hb_032202_120--Hb_001433_070 Hb_032202_120--Hb_005289_040 Hb_012753_170 Hb_012753_170 Hb_032202_120--Hb_012753_170 Hb_002890_120 Hb_002890_120 Hb_032202_120--Hb_002890_120 Hb_032202_120--Hb_005588_090 Hb_000505_020 Hb_000505_020 Hb_011689_060--Hb_000505_020 Hb_001235_140 Hb_001235_140 Hb_011689_060--Hb_001235_140 Hb_002078_100 Hb_002078_100 Hb_011689_060--Hb_002078_100 Hb_004096_070 Hb_004096_070 Hb_011689_060--Hb_004096_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.80348 6.2123 7.9505 4.88313 8.33796 9.42271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.48629 5.17632 2.22657 10.8787 6.3444

CAGE analysis