Hb_000134_270

Information

Type -
Description -
Location Contig134: 237914-243680
Sequence    

Annotation

kegg
ID rcu:RCOM_1526370
description arginine/serine rich splicing factor sf4/14, putative
nr
ID XP_002513189.1
description arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
swissprot
ID Q94C11
description SURP and G-patch domain-containing protein 1-like protein OS=Arabidopsis thaliana GN=At3g52120 PE=2 SV=1
trembl
ID B9RHH0
description Arginine/serine rich splicing factor sf4/14, putative OS=Ricinus communis GN=RCOM_1526370 PE=4 SV=1
Gene Ontology
ID GO:0003723
description surp and g-patch domain-containing protein 1-like protein isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09613: 241595-242815 , PASA_asmbl_09614: 237968-242122 , PASA_asmbl_09615: 242921-243680 , PASA_asmbl_09616: 240412-243663 , PASA_asmbl_09619: 242245-243506
cDNA
(Sanger)
(ID:Location)		 009_E05.ab1: 242930-243680 , 034_F17.ab1: 242921-243680

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_270 0.0 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
2 Hb_000044_040 0.0599714539 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
3 Hb_000318_120 0.0602776925 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
4 Hb_005289_040 0.0640622275 - - poly(A) polymerase, putative [Ricinus communis]
5 Hb_002889_010 0.0662091905 - - ubx domain-containing, putative [Ricinus communis]
6 Hb_000665_120 0.0728852458 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
7 Hb_004020_040 0.0744098228 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
8 Hb_000917_320 0.0753412859 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
9 Hb_002805_190 0.0753610442 - - spliceosome associated protein, putative [Ricinus communis]
10 Hb_000398_080 0.0759846409 - - tip120, putative [Ricinus communis]
11 Hb_128548_010 0.0766970668 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000329_370 0.0775704406 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
13 Hb_003861_050 0.0775863615 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
14 Hb_003878_110 0.0777256593 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
15 Hb_001089_070 0.078683283 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
16 Hb_011537_050 0.078954472 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
17 Hb_001430_080 0.0790042915 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
18 Hb_016777_040 0.0791179735 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
19 Hb_004096_190 0.0793178739 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
20 Hb_000005_220 0.0795476517 - - DNA ligase 1, partial [Glycine soja]

Gene co-expression network

sample Hb_000134_270 Hb_000134_270 Hb_000044_040 Hb_000044_040 Hb_000134_270--Hb_000044_040 Hb_000318_120 Hb_000318_120 Hb_000134_270--Hb_000318_120 Hb_005289_040 Hb_005289_040 Hb_000134_270--Hb_005289_040 Hb_002889_010 Hb_002889_010 Hb_000134_270--Hb_002889_010 Hb_000665_120 Hb_000665_120 Hb_000134_270--Hb_000665_120 Hb_004020_040 Hb_004020_040 Hb_000134_270--Hb_004020_040 Hb_007441_130 Hb_007441_130 Hb_000044_040--Hb_007441_130 Hb_001268_280 Hb_001268_280 Hb_000044_040--Hb_001268_280 Hb_021443_040 Hb_021443_040 Hb_000044_040--Hb_021443_040 Hb_001500_050 Hb_001500_050 Hb_000044_040--Hb_001500_050 Hb_004097_070 Hb_004097_070 Hb_000044_040--Hb_004097_070 Hb_055235_020 Hb_055235_020 Hb_000318_120--Hb_055235_020 Hb_003943_020 Hb_003943_020 Hb_000318_120--Hb_003943_020 Hb_000523_080 Hb_000523_080 Hb_000318_120--Hb_000523_080 Hb_007044_110 Hb_007044_110 Hb_000318_120--Hb_007044_110 Hb_000563_420 Hb_000563_420 Hb_000318_120--Hb_000563_420 Hb_003638_090 Hb_003638_090 Hb_005289_040--Hb_003638_090 Hb_005588_090 Hb_005588_090 Hb_005289_040--Hb_005588_090 Hb_000398_080 Hb_000398_080 Hb_005289_040--Hb_000398_080 Hb_002805_190 Hb_002805_190 Hb_005289_040--Hb_002805_190 Hb_154580_010 Hb_154580_010 Hb_005289_040--Hb_154580_010 Hb_016777_040 Hb_016777_040 Hb_002889_010--Hb_016777_040 Hb_003861_050 Hb_003861_050 Hb_002889_010--Hb_003861_050 Hb_002471_240 Hb_002471_240 Hb_002889_010--Hb_002471_240 Hb_001377_310 Hb_001377_310 Hb_002889_010--Hb_001377_310 Hb_000816_250 Hb_000816_250 Hb_002889_010--Hb_000816_250 Hb_007765_100 Hb_007765_100 Hb_000665_120--Hb_007765_100 Hb_000797_040 Hb_000797_040 Hb_000665_120--Hb_000797_040 Hb_028960_020 Hb_028960_020 Hb_000665_120--Hb_028960_020 Hb_002205_030 Hb_002205_030 Hb_000665_120--Hb_002205_030 Hb_008059_010 Hb_008059_010 Hb_000665_120--Hb_008059_010 Hb_002811_270 Hb_002811_270 Hb_000665_120--Hb_002811_270 Hb_021374_010 Hb_021374_010 Hb_004020_040--Hb_021374_010 Hb_000035_110 Hb_000035_110 Hb_004020_040--Hb_000035_110 Hb_001040_100 Hb_001040_100 Hb_004020_040--Hb_001040_100 Hb_000227_220 Hb_000227_220 Hb_004020_040--Hb_000227_220 Hb_004020_040--Hb_001377_310 Hb_001922_150 Hb_001922_150 Hb_004020_040--Hb_001922_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.4661 38.4785 44.7413 27.4635 37.2087 38.7196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.1489 23.2754 17.5279 40.5337 40.0816

CAGE analysis